RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PACSIN2Q9UNF0 486 aaPredicted RBP16.46■□□□□ 0.23
LIMS1-202ENST00000338045 GIT1Q9Y2X7 761 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 CEP350Q5VT06 3117 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 A0A0U1RQF3 1178 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 CES2O00748 559 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 ATMINO43313 823 aaPredicted RBP16.46■□□□□ 0.22
LIMS1-202ENST00000338045 MED7O43513 233 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 C1QBPQ07021 282 aaKnown RBP16.46■□□□□ 0.22
LIMS1-202ENST00000338045 RPS6KA1Q15418 735 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 ERCC6LQ2NKX8 1250 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 AGMOQ6ZNB7 445 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 PEX26Q7Z412 305 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 HES6Q96HZ4 224 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 ZFP42Q96MM3 310 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 ZNF560Q96MR9 790 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 MMS19Q96T76 1030 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 NUP85Q9BW27 656 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 LHX5Q9H2C1 402 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 GDAP2Q9NXN4 497 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.46■□□□□ 0.22
LIMS1-202ENST00000338045 OGDHLQ9ULD0 1010 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.46■□□□□ 0.22
LIMS1-202ENST00000338045 SNX9Q9Y5X1 595 aa16.46■□□□□ 0.22
LIMS1-202ENST00000338045 V9GYY5 206 aaPredicted RBP16.46■□□□□ 0.22
LIMS1-202ENST00000338045 CTAGE15A4D2H0 777 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 PDE2AO00408 941 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-202ENST00000338045 CTAGE8P0CG41 777 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 MMP8P22894 467 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 NDST1P52848 882 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 TUBB4BP68371 445 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 LIMS2Q7Z4I7 341 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 CTAGE6Q86UF2 777 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 CTAGE4Q8IX94 777 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 TMEM35BQ8NCS4 154 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 ZNF564Q8TBZ8 553 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-202ENST00000338045 UBXN4Q92575 508 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 RPGRIP1Q96KN7 1286 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 SLC38A7Q9NVC3 462 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 RNF14Q9UBS8 474 aa16.45■□□□□ 0.22
LIMS1-202ENST00000338045 CHORDC1Q9UHD1 332 aaPredicted RBP16.45■□□□□ 0.22
LIMS1-202ENST00000338045 VDRP11473 427 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 RRM1P23921 792 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 CXCR5P32302 372 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 SSTR3P32745 418 aaPredicted RBP16.44■□□□□ 0.22
LIMS1-202ENST00000338045 MLH1P40692 756 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 MBTPS1Q14703 1052 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 MTFR1Q15390 333 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 WDTC1Q8N5D0 677 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 CAGE1Q8TC20 777 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 GOLGA1Q92805 767 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 CAPZA3Q96KX2 299 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 GAD1Q99259 594 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 PSMB7Q99436 277 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 NT5C1AQ9BXI3 368 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 GOLGA2P5Q9HBQ8 144 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ADAM22Q9P0K1 906 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 AMFRQ9UKV5 643 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 KIAA1257Q9ULG3 409 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 KPNA7A9QM74 516 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 SPTLC1O15269 473 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 SKIP12755 728 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 CD19P15391 556 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 TAF6P49848 677 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ITIH3Q06033 890 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ELF2Q15723 593 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 SOWAHAQ2M3V2 549 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 PLEKHA7Q6IQ23 1121 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 FAM126BQ8IXS8 530 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ANKRD7Q92527 254 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 LPPQ93052 612 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 DEFB118Q96PH6 123 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ADAM2Q99965 735 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 MRPL45Q9BRJ2 306 aaKnown RBP16.44■□□□□ 0.22
LIMS1-202ENST00000338045 C11orf70Q9BRQ4 267 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 CEP83Q9Y592 693 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ALG6Q9Y672 507 aa16.44■□□□□ 0.22
LIMS1-202ENST00000338045 ARL5CA6NH57 179 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 O00370 1275 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 CCL5P13501 91 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 HSPA6P17066 643 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 CNGA2Q16280 664 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 SV2CQ496J9 727 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 LIN9Q5TKA1 542 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 MMS22LQ6ZRQ5 1243 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 UNC93AQ86WB7 457 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 C1orf131Q8NDD1 294 aaKnown RBP16.43■□□□□ 0.22
LIMS1-202ENST00000338045 RABGGTAQ92696 567 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 RPS6KC1Q96S38 1066 aa16.43■□□□□ 0.22
LIMS1-202ENST00000338045 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.43■□□□□ 0.22
LIMS1-202ENST00000338045 THP07101 528 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 AFF1P51825 1210 aaKnown RBP16.42■□□□□ 0.22
LIMS1-202ENST00000338045 LILRA4P59901 499 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 ORC1Q13415 861 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 DENND1BQ6P3S1 775 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 ZNF598Q86UK7 904 aaKnown RBP16.42■□□□□ 0.22
LIMS1-202ENST00000338045 PBKQ96KB5 322 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 MIOSQ9NXC5 875 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 NME7Q9Y5B8 376 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 TCRBV5S1A1TA0A578 114 aa16.42■□□□□ 0.22
LIMS1-202ENST00000338045 DDX3YO15523 660 aaKnown RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms