RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TRIM10Q9UDY6 481 aa15.9■□□□□ 0.14
CCDC88C-202ENST00000334448 KIAA0100Q14667 2235 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 FANCGO15287 622 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 MED7O43513 233 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 MTA2O94776 668 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TIMP1P01033 207 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 PFKMP08237 780 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 VDRP11473 427 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 NDST1P52848 882 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 CCL23P55773 120 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 GNG11P61952 73 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 PHF13Q86YI8 300 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 NPAS4Q8IUM7 802 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 CRYBG2Q8N1P7 616 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TMEM86AQ8N2M4 240 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 RNF169Q8NCN4 708 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TRIM58Q8NG06 486 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 CTNNBL1Q8WYA6 563 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 RFFLQ8WZ73 363 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TRIM11Q96F44 468 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 VCPIP1Q96JH7 1222 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 MMS19Q96T76 1030 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 PPP1R12CQ9BZL4 782 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 LHX5Q9H2C1 402 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 AVENQ9NQS1 362 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TAS2R14Q9NYV8 317 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 HMGXB4Q9UGU5 601 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 GTF3C4Q9UKN8 822 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 GUCA1BQ9UMX6 200 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 L1RE1Q9UN81 338 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TFR2Q9UP52 801 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 PCDHGC5Q9Y5F6 944 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 TRIP11Q15643 1979 aa15.89■□□□□ 0.13
CCDC88C-202ENST00000334448 O00370 1275 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 GABRDO14764 452 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 THAP12O43422 761 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 HUS1O60921 280 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 FTLP02792 175 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 MYBL1P10243 752 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 CLCNKBP51801 687 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 CNGA2Q16280 664 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 IFI16Q16666 785 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 ARHGAP17Q68EM7 881 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 CD300LGQ6UXG3 332 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 SYT10Q6XYQ8 523 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 RHOT2Q8IXI1 618 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 APPL2Q8NEU8 664 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 KIF18AQ8NI77 898 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 UBE2Q2Q8WVN8 375 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 TFAP2BQ92481 460 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 NOX5Q96PH1 765 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 WDR24Q96S15 920 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 MRPL45Q9BRJ2 306 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 IRX2Q9BZI1 471 aaPredicted RBP15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 DNAI2Q9GZS0 605 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 SEPT11Q9NVA2 429 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 SALL4Q9UJQ4 1053 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 PAXBP1Q9Y5B6 917 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 DUSP10Q9Y6W6 482 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 SCN1AP35498 2009 aa15.88■□□□□ 0.13
CCDC88C-202ENST00000334448 ARHGEF37A1IGU5 675 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 M0QZQ0 153 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 EFCAB14O75071 495 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 POMCP01189 267 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 CYP11A1P05108 521 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 CYP1A2P05177 515 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 BRD2P25440 801 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 C1QBPQ07021 282 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 DCLRE1AQ6PJP8 1040 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 LCLAT1Q6UWP7 414 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 MON1BQ7L1V2 547 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 COLGALT2Q8IYK4 626 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 ADGRF2Q8IZF7 708 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 PDCL2Q8N4E4 241 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 C3orf58Q8NDZ4 430 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 MRPL9Q9BYD2 267 aaKnown RBP15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 TBC1D13Q9NVG8 400 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 STXBP5LQ9Y2K9 1186 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 NME7Q9Y5B8 376 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 PCDHB7Q9Y5E2 793 aa15.87■□□□□ 0.13
CCDC88C-202ENST00000334448 TTC3P53804 2025 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 ABHD14A-ACY1A0A1B0GW23 586 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 TRIM43BA6NCK2 446 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 CASTOR2A6NHX0 329 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 FGFR1P11362 822 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 MMP8P22894 467 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 NSFP46459 744 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 GSCP56915 257 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 GPC5P78333 572 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 PTP4A2Q12974 167 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 IKBKEQ14164 716 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 SGO2Q562F6 1265 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 ZNF569Q5MCW4 686 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 MFSD5Q6N075 450 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 MCOLN2Q8IZK6 566 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 SLC35F6Q8N357 371 aa15.86■□□□□ 0.13
CCDC88C-202ENST00000334448 TMEM35BQ8NCS4 154 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms