RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TRIM9Q9C026 710 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 CUEDC2Q9H467 287 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 KBTBD4Q9NVX7 518 aa21.07■□□□□ 0.96
LIME1-201ENST00000309546 A0A1W2PRU2 124 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 KANSL1LA0AUZ9 987 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 KPNA7A9QM74 516 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 EXTL3O43909 919 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 CD72P21854 359 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 AMPD3Q01432 767 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 MGAT5BQ3V5L5 792 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 TPRG1Q6ZUI0 275 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 TMC8Q8IU68 726 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 IQUBQ8NA54 791 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 ZSCAN18Q8TBC5 510 aaPredicted RBP21.06■□□□□ 0.96
LIME1-201ENST00000309546 SMARCD2Q92925 531 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 ZCWPW1Q9H0M4 648 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 BRD9Q9H8M2 597 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 AGAP1Q9UPQ3 857 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 TICRRQ7Z2Z1 1910 aa21.06■□□□□ 0.96
LIME1-201ENST00000309546 PROB1E7EW31 1015 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 GLULP15104 373 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 PNPLA4P41247 253 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 VIPR2P41587 438 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 GPD1LQ8N335 351 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 CACTINQ8WUQ7 758 aaKnown RBP21.05■□□□□ 0.96
LIME1-201ENST00000309546 LPIN3Q9BQK8 851 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 PDE11AQ9HCR9 933 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 HEBP1Q9NRV9 189 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 DLGAP2Q9P1A6 1054 aa21.05■□□□□ 0.96
LIME1-201ENST00000309546 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 KRT19P08727 400 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 TMEM191BP0C7N4 346 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 ME1P48163 572 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 BFSP1Q12934 665 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 PKP1Q13835 747 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 LMBRD2Q68DH5 695 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 VITQ6UXI7 678 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 ASCL5Q7RTU5 278 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 DNAJB7Q7Z6W7 309 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 C1orf127Q8N9H9 656 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 KCNG4Q8TDN1 519 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 NKD2Q969F2 451 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 BORCS6Q96GS4 357 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 DDX23Q9BUQ8 820 aaKnown RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 TRMT61BQ9BVS5 477 aaKnown RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 LRRC3Q9BY71 257 aa21.04■□□□□ 0.96
LIME1-201ENST00000309546 ZNF334Q9HCZ1 680 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 ABI2Q9NYB9 513 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 MTF2Q9Y483 593 aaPredicted RBP21.04■□□□□ 0.96
LIME1-201ENST00000309546 FAM170BA6NMN3 283 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 POLR2DO15514 142 aaKnown RBP21.03■□□□□ 0.96
LIME1-201ENST00000309546 PDIA4P13667 645 aaKnown RBP21.03■□□□□ 0.96
LIME1-201ENST00000309546 GDI1P31150 447 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 TUFMP49411 452 aaKnown RBP21.03■□□□□ 0.96
LIME1-201ENST00000309546 VEPH1Q14D04 833 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 STXBP5Q5T5C0 1151 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 ITIH5Q86UX2 942 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 CSGALNACT2Q8N6G5 542 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 DNASE1L2Q92874 299 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 PSMG2Q969U7 264 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 BCO2Q9BYV7 579 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 MTMR12Q9C0I1 747 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 GPR88Q9GZN0 384 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 ATXN3LQ9H3M9 355 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 LTB4R2Q9NPC1 389 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 FAM13BQ9NYF5 915 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 HSFX1Q9UBD0 423 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 ITGA11Q9UKX5 1188 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 ASB3Q9Y575 518 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 PATJQ8NI35 1801 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 COL4A2P08572 1712 aa21.03■□□□□ 0.96
LIME1-201ENST00000309546 NUP210Q8TEM1 1887 aaPredicted RBP21.03■□□□□ 0.96
LIME1-201ENST00000309546 PRR23AA6NEV1 266 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 PSMC3P17980 439 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 ATF6P18850 670 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 GABRR2P28476 465 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 TAF12Q16514 161 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 FAM26FQ5R3K3 315 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 LRRTM3Q86VH5 581 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 GPIHBP1Q8IV16 184 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 C1orf210Q8IVY1 113 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 DCP1BQ8IZD4 617 aaKnown RBP21.02■□□□□ 0.96
LIME1-201ENST00000309546 DEPDC1BQ8WUY9 529 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 BLZF1Q9H2G9 400 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 PCDHA7Q9UN72 937 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 USP34Q70CQ2 3546 aa21.02■□□□□ 0.96
LIME1-201ENST00000309546 NCANO14594 1321 aa21.02■□□□□ 0.95
LIME1-201ENST00000309546 HEPACAM2A8MVW5 462 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 KIAA0391O15091 583 aaKnown RBP21.01■□□□□ 0.95
LIME1-201ENST00000309546 EIF3DO15371 548 aaKnown RBP eCLIP21.01■□□□□ 0.95
LIME1-201ENST00000309546 HUS1O60921 280 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 TARSP26639 723 aaKnown RBP21.01■□□□□ 0.95
LIME1-201ENST00000309546 CASP1P29466 404 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 TSPY1Q01534 308 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 SCARA3Q6AZY7 606 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 GAREM2Q75VX8 874 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 CBWD2Q8IUF1 395 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 PDCL2Q8N4E4 241 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 LRRC52Q8N7C0 313 aa21.01■□□□□ 0.95
LIME1-201ENST00000309546 SPPL2BQ8TCT7 592 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms