RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 KMT5AQ9NQR1 393 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 C1orf112Q9NSG2 853 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 SLC17A7Q9P2U7 560 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 SCAF8Q9UPN6 1271 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 UBIAD1Q9Y5Z9 338 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 NPM3O75607 178 aaKnown RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 DCTN3O75935 186 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 LYPLA2O95372 231 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 VNN1O95497 513 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 IFNB1P01574 187 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 PCK1P35558 622 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 PIK3CAP42336 1068 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 CTCFP49711 727 aaPredicted RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 ACOT2P49753 483 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 OGDHQ02218 1023 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 DMP1Q13316 513 aaPredicted RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 TFDP1Q14186 410 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 RNASEH2BQ5TBB1 312 aaKnown RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 HHATQ5VTY9 493 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 CC2D2BQ6DHV5 1058 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 RIBC1Q8N443 379 aaPredicted RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 ALLCQ8N6M5 410 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 BBOF1Q8ND07 529 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 UCMAQ8WVF2 138 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 NRG4Q8WWG1 115 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 FAM81BQ96LP2 452 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 SLITRK1Q96PX8 696 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 MOV10L1Q9BXT6 1211 aaKnown RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 METTL5Q9NRN9 209 aaKnown RBP13.09□□□□□ -0.31
NUP88-201ENST00000225696 ARL8BQ9NVJ2 186 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 ZFP69BQ9UJL9 534 aa13.09□□□□□ -0.31
NUP88-201ENST00000225696 BRWD3Q6RI45 1802 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 LOXHD1Q8IVV2 1947 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 LIN7AO14910 233 aaPredicted RBP13.08□□□□□ -0.31
NUP88-201ENST00000225696 ALOX15BO15296 676 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 ENTPD3O75355 529 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 ATP5HO75947 161 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 HLA-DRAP01903 254 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 MYCLP12524 364 aaPredicted RBP13.08□□□□□ -0.31
NUP88-201ENST00000225696 NRLP54845 237 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 GDF10P55107 478 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 INHBEP58166 350 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 SATB1Q01826 763 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 AOC3Q16853 763 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 ZBTB41Q5SVQ8 909 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 FNBP1LQ5T0N5 605 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 PLEKHA7Q6IQ23 1121 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 APBB1IPQ7Z5R6 666 aaPredicted RBP13.08□□□□□ -0.31
NUP88-201ENST00000225696 C4orf19Q8IY42 314 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 SPDYE1Q8NFV5 336 aaPredicted RBP13.08□□□□□ -0.31
NUP88-201ENST00000225696 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.08□□□□□ -0.31
NUP88-201ENST00000225696 ZBTB10Q96DT7 871 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 PIDD1Q9HB75 910 aa13.08□□□□□ -0.31
NUP88-201ENST00000225696 ZNF541Q9H0D2 1346 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 TRAFD1O14545 582 aaPredicted RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 CLGNO14967 610 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 ZNF862O60290 1169 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 ITGBL1O95965 494 aaPredicted RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 ATP6V1C1P21283 382 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 GLRA2P23416 452 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 ALDH3A1P30838 453 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 NLRP11P59045 1033 aaKnown RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 SNRPFP62306 86 aaKnown RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 NR1H3Q13133 447 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 OASLQ15646 514 aaKnown RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 EAPPQ56P03 285 aaPredicted RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 C4orf50Q6ZRC1 276 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 LRRC6Q86X45 466 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 ABRAQ8N0Z2 381 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 GPD1LQ8N335 351 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 PHC3Q8NDX5 983 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 TCP10LQ8TDR4 215 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 IWS1Q96ST2 819 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 HAPLN2Q9GZV7 340 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 FBXO6Q9NRD1 293 aaPredicted RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 RABGEF1Q9UJ41 708 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 SMG5Q9UPR3 1016 aaKnown RBP13.08□□□□□ -0.32
NUP88-201ENST00000225696 EXOC7Q9UPT5 735 aa13.08□□□□□ -0.32
NUP88-201ENST00000225696 A0A0G2JND7 137 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 TCRBV7S3A2A0A539 114 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 CFAP69A5D8W1 941 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 C2CD2LO14523 706 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 LUC7L3O95232 432 aaKnown RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 KRT1P04264 644 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 TNNI1P19237 187 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 PTPN4P29074 926 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 GNA15P30679 374 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 CAP2P40123 477 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 PTGER2P43116 358 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 PSMC5P62195 406 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 SLC45A4Q5BKX6 768 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.07□□□□□ -0.32
NUP88-201ENST00000225696 TLE6Q9H808 572 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 NMRK1Q9NWW6 199 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 PCDHB4Q9Y5E5 795 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 SIGLEC16A6NMB1 481 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 KRT36O76013 467 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 C4BPAP04003 597 aaKnown RBP13.07□□□□□ -0.32
NUP88-201ENST00000225696 ALDH1B1P30837 517 aa13.07□□□□□ -0.32
NUP88-201ENST00000225696 GTF2H1P32780 548 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms