RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TRIM42Q8IWZ5 723 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 E2F7Q96AV8 911 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 NELL2Q99435 816 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 RAD9AQ99638 391 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PHF20Q9BVI0 1012 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CELF4Q9BZC1 486 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DNAJC11Q9NVH1 559 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 KLHL11Q9NVR0 708 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DEC1Q9P2X7 70 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF711Q9Y462 761 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SGK1O00141 431 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 FZD9O00144 591 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DFFAO00273 331 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MAN2B1O00754 1011 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 TRIM66O15016 1216 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 TBX3O15119 743 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 YWHAQP27348 245 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MRPS5P82675 430 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 UVSSAQ2YD98 709 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC62Q6P9F0 684 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 TRIM72Q6ZMU5 477 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DCLK2Q8N568 766 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 WDR19Q8NEZ3 1342 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 TLR7Q9NYK1 1049 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SATB2Q9UPW6 733 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PTPN22Q9Y2R2 807 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 NEMP2A6NFY4 417 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DDTLA6NHG4 134 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 LRRC72A6NJI9 287 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MLYCDO95822 493 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 KRT8P05787 483 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CYP2C18P33260 490 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CACNB1Q02641 598 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SMARCB1Q12824 385 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 EGFL8Q99944 293 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CNPPD1Q9BV87 410 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SMPD4Q9NXE4 827 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DPP3Q9NY33 737 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 KCND2Q9NZV8 630 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 GCNT4Q9P109 453 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 AFF4Q9UHB7 1163 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 EDARQ9UNE0 448 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MROH1Q8NDA8 1641 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SETBP1Q9Y6X0 1596 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 ARHGAP42A6NI28 874 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DTNBO60941 627 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 RHOBTB1O94844 696 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 LMNAP02545 664 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MUTP22033 750 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CDH8P55286 799 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 GNG11P61952 73 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 IL1RL1Q01638 556 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 ARMC2Q8NEN0 867 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 IRF7Q92985 503 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 GFM2Q969S9 779 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 STAP2Q9UGK3 403 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SEPT3Q9UH03 358 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 GUCA1BQ9UMX6 200 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 DIS3Q9Y2L1 958 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MRFAP1Q9Y605 127 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 AKR1B15C9JRZ8 316 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PPP1R12AO14974 1030 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 BUB1O43683 1085 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 H2AFZP0C0S5 128 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 TGM3Q08188 693 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 EFHC1Q5JVL4 640 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 FAM102AQ5T9C2 384 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 H2AFVQ71UI9 128 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CACUL1Q86Y37 369 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CAMKK1Q8N5S9 505 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 GMCL1P1Q8NEA9 526 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 OR6P1Q8NGX9 317 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 HAPLN3Q96S86 360 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SOHLH2Q9NX45 425 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SLC12A8A0AV02 714 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC151A5D8V7 595 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 GSG1L2A8MUP6 293 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 NCAM1P13591 858 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PTPN2P17706 415 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MX2P20592 715 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CXCR2P25025 360 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PSMC1P62191 440 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 FLOT2Q14254 428 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 RPS6KA1Q15418 735 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PGLYRP2Q96PD5 576 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 CYP26B1Q9NR63 512 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SMYD2Q9NRG4 433 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SPATS2LQ9NUQ6 558 aaKnown RBP5.28□□□□□ -1.56
SCN1A-218ENST00000640036 NKIRAS1Q9NYS0 192 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 HDAC6Q9UBN7 1215 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 SALL1Q9NSC2 1324 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CCDC78A2IDD5 438 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 UBXN8O00124 270 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 HIP1RO75146 1068 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 EYA4O95677 639 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 MARSP56192 900 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CCDC121Q6ZUS5 278 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CLEC10AQ8IUN9 316 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 MCOLN3Q8TDD5 553 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 FAM122AQ96E09 287 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms