RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TTC9BQ8N6N2 239 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 FAM212AQ96EL1 285 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 MSANTD3Q96H12 275 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 DNAJC25Q9H1X3 360 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 C2orf42Q9NWW7 574 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 MAFFQ9ULX9 164 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 STK24Q9Y6E0 443 aa16.34■□□□□ 0.21
SYNE2-228ENST00000639659 K7ESF4 209 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 AXIN1O15169 862 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 LRP3O75074 770 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 VNN2O95498 520 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 GABRR2P28476 465 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 TRAPPC10P48553 1259 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 PXNP49023 591 aaPredicted RBP16.33■□□□□ 0.2
SYNE2-228ENST00000639659 SMTNP53814 917 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 CYP4F8P98187 520 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 CACNB1Q02641 598 aaPredicted RBP16.33■□□□□ 0.2
SYNE2-228ENST00000639659 PPP2R3AQ06190 1150 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 ARHGAP15Q53QZ3 475 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 IL31Q6EBC2 164 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 MAMSTRQ6ZN01 415 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 C4orf32Q8N8J7 132 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 ATAD1Q8NBU5 361 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 SEPT5Q99719 369 aaPredicted RBP16.33■□□□□ 0.2
SYNE2-228ENST00000639659 PCDHB6Q9Y5E3 794 aa16.33■□□□□ 0.2
SYNE2-228ENST00000639659 KIF26AQ9ULI4 1882 aaPredicted RBP16.33■□□□□ 0.2
SYNE2-228ENST00000639659 MTMR11A4FU01 709 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 OR6C75A6NL08 312 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 M0QZQ0 153 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 TULP1O00294 542 aaPredicted RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 TNFSF9P41273 254 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 MAP1BP46821 2468 aaKnown RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 TNK2Q07912 1038 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 PDIA5Q14554 519 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 SF3A2Q15428 464 aaKnown RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 WDR44Q5JSH3 913 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 DGKKQ5KSL6 1271 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 OVOS1Q6IE37 1185 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 ARMCX5Q6P1M9 558 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 C1orf228Q6PIY5 440 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 C1orf186Q6ZWK4 172 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 IGSF22Q8N9C0 903 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 C12orf50Q8NA57 414 aaPredicted RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 FBXO18Q8NFZ0 1043 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 GCNAQ96QF7 691 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 TMEM209Q96SK2 561 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 LPIN3Q9BQK8 851 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 LRRC3Q9BY71 257 aa16.32■□□□□ 0.2
SYNE2-228ENST00000639659 SMG9Q9H0W8 520 aaKnown RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 KMT2BQ9UMN6 2715 aaPredicted RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 UBQLN1Q9UMX0 589 aaKnown RBP16.32■□□□□ 0.2
SYNE2-228ENST00000639659 NUP210Q8TEM1 1887 aaPredicted RBP16.31■□□□□ 0.2
SYNE2-228ENST00000639659 NPHP3-ACAD11A0A0J9YXS1 232 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 MYBPHLA2RUH7 354 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 PPEF2O14830 753 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 PRAMEF12O95522 483 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 CLTAP09496 248 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 MAPTP10636 758 aaKnown RBP16.31■□□□□ 0.2
SYNE2-228ENST00000639659 PLS3P13797 630 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 CNR2P34972 360 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 LIG4P49917 911 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 FCHO2Q0JRZ9 810 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 GPR17Q13304 367 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 TAF12Q16514 161 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 ARHGAP29Q52LW3 1261 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 DTHD1Q6ZMT9 781 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 GAREM2Q75VX8 874 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 DNAJB7Q7Z6W7 309 aaPredicted RBP16.31■□□□□ 0.2
SYNE2-228ENST00000639659 RALGPS2Q86X27 583 aaPredicted RBP16.31■□□□□ 0.2
SYNE2-228ENST00000639659 TMEM161BQ8NDZ6 487 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 BEST2Q8NFU1 509 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 CDK5RAP3Q96JB5 506 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 LRRC3BQ96PB8 259 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 ARRDC1-AS1Q9H2J1 176 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 C17orf75Q9HAS0 396 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 LIMCH1Q9UPQ0 1083 aa16.31■□□□□ 0.2
SYNE2-228ENST00000639659 LACTBL1A8MY62 500 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 XPOTO43592 962 aaKnown RBP16.3■□□□□ 0.2
SYNE2-228ENST00000639659 OAZ2O95190 189 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 CCDC192P0DO97 292 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 ODC1P11926 461 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 LRPAP1P30533 357 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 MCL1Q07820 350 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 VEPH1Q14D04 833 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 MGAT5BQ3V5L5 792 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 CENPPQ6IPU0 288 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 ZPBP2Q6X784 338 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 ITIH5Q86UX2 942 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 TTC16Q8NEE8 873 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 SPIRE2Q8WWL2 714 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 TIPINQ9BVW5 301 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 HAPLN2Q9GZV7 340 aa16.3■□□□□ 0.2
SYNE2-228ENST00000639659 RPF1Q9H9Y2 349 aaKnown RBP16.3■□□□□ 0.2
SYNE2-228ENST00000639659 ANK1P16157 1881 aa16.29■□□□□ 0.2
SYNE2-228ENST00000639659 SDK1Q7Z5N4 2213 aa16.29■□□□□ 0.2
SYNE2-228ENST00000639659 TTC26A0AVF1 554 aa16.29■□□□□ 0.2
SYNE2-228ENST00000639659 HNRNPDLO14979 420 aaKnown RBP16.29■□□□□ 0.2
SYNE2-228ENST00000639659 EXTL3O43909 919 aa16.29■□□□□ 0.2
SYNE2-228ENST00000639659 GUCY2CP25092 1073 aa16.29■□□□□ 0.2
SYNE2-228ENST00000639659 TOB1P50616 345 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms