RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 HCRTO43612 131 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 THP07101 528 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 GNA15P30679 374 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 TNNC1P63316 161 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 SLC24A5Q71RS6 500 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 DEFB128Q7Z7B8 93 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 PASD1Q8IV76 773 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 TOX2Q96NM4 488 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 MRPL45Q9BRJ2 306 aaKnown RBP21.48■■□□□ 1.03
CLN3-250ENST00000636839 TSPYL2Q9H2G4 693 aaPredicted RBP21.48■■□□□ 1.03
CLN3-250ENST00000636839 C11orf49Q9H6J7 331 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 CHORDC1Q9UHD1 332 aaPredicted RBP21.48■■□□□ 1.03
CLN3-250ENST00000636839 NME7Q9Y5B8 376 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 CASTOR2A6NHX0 329 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 PJA2O43164 708 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 BUB1O43683 1085 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 STAU1O95793 577 aaKnown RBP21.48■■□□□ 1.03
CLN3-250ENST00000636839 FGFR1P11362 822 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 ABCB4P21439 1286 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 BRD2P25440 801 aaKnown RBP21.48■■□□□ 1.03
CLN3-250ENST00000636839 ANXA13P27216 316 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 GALCP54803 685 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 ZNF662Q6ZS27 426 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 ELOVL4Q9GZR5 314 aa21.48■■□□□ 1.03
CLN3-250ENST00000636839 ENPP3O14638 875 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 KRT86O43790 486 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 MOCS3O95396 460 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 CYP3A5P20815 502 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 CLCNKBP51801 687 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 RAD23BP54727 409 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 SLC35F6Q8N357 371 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 LRRC52Q8N7C0 313 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 ZNF606Q8WXB4 792 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 TBX21Q9UL17 535 aa21.47■■□□□ 1.03
CLN3-250ENST00000636839 THAP12O43422 761 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 KIF5CO60282 957 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 FTLP02792 175 aaPredicted RBP21.46■■□□□ 1.03
CLN3-250ENST00000636839 LILRA4P59901 499 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 FAM189BP81408 668 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 SOWAHAQ2M3V2 549 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 CLLU1OSQ5K130 101 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 C1orf53Q5VUE5 145 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 C3orf58Q8NDZ4 430 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 CAPN6Q9Y6Q1 641 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 KPNA7A9QM74 516 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 XPOTO43592 962 aaKnown RBP21.46■■□□□ 1.03
CLN3-250ENST00000636839 B4GALT3O60512 393 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 CILPO75339 1184 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 H2AFZP0C0S5 128 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 ITGB8P26012 769 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 LRPAP1P30533 357 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 H2AFVQ71UI9 128 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 SLC4A11Q8NBS3 891 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 CPA5Q8WXQ8 436 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 PGBD4Q96DM1 585 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 VWCEQ96DN2 955 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 CYFIP2Q96F07 1278 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 LPIN3Q9BQK8 851 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 MCOLN1Q9GZU1 580 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 THAP2Q9H0W7 228 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 TMEM39AQ9NV64 488 aa21.46■■□□□ 1.03
CLN3-250ENST00000636839 P4HA1P13674 534 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 NDST1P52848 882 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 BPIFB4P59827 614 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 C2CD6Q53TS8 623 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 ANKLE1Q8NAG6 615 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 ARHGEF26Q96DR7 871 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 TSPAN18Q96SJ8 248 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 F8W810 466 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 TMEM106CQ9BVX2 250 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 CYP3A43Q9HB55 503 aa21.45■■□□□ 1.02
CLN3-250ENST00000636839 ATMINO43313 823 aaPredicted RBP21.44■■□□□ 1.02
CLN3-250ENST00000636839 SKIP12755 728 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 CD19P15391 556 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 TAF6P49848 677 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 GATMP50440 423 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 CDR1P51861 262 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 CLEC16AQ2KHT3 1053 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 PAN2Q504Q3 1202 aaKnown RBP21.44■■□□□ 1.02
CLN3-250ENST00000636839 C10orf76Q5T2E6 689 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 SEPT8Q92599 483 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 FTHL17Q9BXU8 183 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 ISCUQ9H1K1 167 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 SLC38A7Q9NVC3 462 aa21.44■■□□□ 1.02
CLN3-250ENST00000636839 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 PODXLO00592 558 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 UNGP13051 313 aaPredicted RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 EN2P19622 333 aaPredicted RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 NAA35Q5VZE5 725 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 PHLDB2Q86SQ0 1253 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 ZNF280BQ86YH2 543 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 SECISBP2LQ93073 1101 aaKnown RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 TSGA10Q9BZW7 698 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 PDCL3Q9H2J4 239 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 BARX2Q9UMQ3 279 aaPredicted RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 TRIM43BA6NCK2 446 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 CLTBP09497 229 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 LMO2P25791 158 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 NAP1L1P55209 391 aaKnown RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 YWHAEP62258 255 aaKnown RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms