RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 RAB6BQ9NRW1 208 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 SNED1Q8TER0 1413 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 AP3M2P53677 418 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 DAB2IPQ5VWQ8 1189 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 BTNL9Q6UXG8 535 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 PRELID2Q8N945 189 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 PRPF31Q8WWY3 499 aaKnown RBP13.54□□□□□ -0.24
MSH6-215ENST00000622629 KIF12Q96FN5 646 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 SGSM3Q96HU1 749 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 SERPINB12Q96P63 405 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 IFT122Q9HBG6 1241 aa13.54□□□□□ -0.24
MSH6-215ENST00000622629 GYG2O15488 501 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 RIPK2O43353 540 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 PROSCO94903 275 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 TNFRSF8P28908 595 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 ITGB3BPQ13352 177 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 KIF22Q14807 665 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 CFAP73A6NFT4 308 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 CSDE1O75534 798 aaKnown RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 PDZD4Q76G19 769 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 TEX2Q8IWB9 1127 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 UBA3Q8TBC4 463 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 SPATA18Q8TC71 538 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 ELP3Q9H9T3 547 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 PCDHA3Q9Y5H8 950 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 SUPT20HL2P0C7V6 817 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 TCF7P36402 384 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 NLRP11P59045 1033 aaKnown RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 CENPCQ03188 943 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 TAP1Q03518 808 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 TTLL4Q14679 1199 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 ASTE1Q2TB18 679 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 CYB5D1Q6P9G0 228 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 RAPH1Q70E73 1250 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 MREGQ8N565 214 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 TMEM121Q9BTD3 319 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 NPHS2Q9NP85 383 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 RGS17Q9UGC6 210 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 TTC4O95801 387 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 SCTRP47872 440 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 MYL6P60660 151 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 MXD4Q14582 209 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 TRIM42Q8IWZ5 723 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 SMC1BQ8NDV3 1235 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 FHDC1Q9C0D6 1143 aaPredicted RBP13.53□□□□□ -0.24
MSH6-215ENST00000622629 KIAA1683Q9H0B3 1180 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 VCXQ9H320 206 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 NR2E1Q9Y466 385 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 SNX9Q9Y5X1 595 aa13.53□□□□□ -0.24
MSH6-215ENST00000622629 BTNL10A8MVZ5 291 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 VWA5AO00534 786 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 KCNN4O15554 427 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 MAPTP10636 758 aaKnown RBP13.52□□□□□ -0.24
MSH6-215ENST00000622629 ARFIP2P53365 341 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 ATF7IP2Q5U623 682 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 EMC1Q8N766 993 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 ERVK-5Q9HDB9 667 aa13.52□□□□□ -0.24
MSH6-215ENST00000622629 COL16A1Q07092 1604 aaPredicted RBP13.52□□□□□ -0.25
MSH6-215ENST00000622629 XPOTO43592 962 aaKnown RBP13.52□□□□□ -0.25
MSH6-215ENST00000622629 HAUS5O94927 633 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 ADORA2BP29275 332 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 FAM71DQ8N9W8 422 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 SPIRE2Q8WWL2 714 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 GRAMD1AQ96CP6 724 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 WHRNQ9P202 907 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 RPS6KA5O75582 802 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 KRT38O76015 456 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 TNFAIP2Q03169 654 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 UGCGQ16739 394 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 RFX8Q6ZV50 586 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 MAP4K3Q8IVH8 894 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 SIX6OS1Q8N1H7 587 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 CYTH2Q99418 400 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 FAM49BQ9NUQ9 324 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 SENP1Q9P0U3 644 aa13.52□□□□□ -0.25
MSH6-215ENST00000622629 XPO7Q9UIA9 1087 aaKnown RBP13.52□□□□□ -0.25
MSH6-215ENST00000622629 AJAP1Q9UKB5 411 aaPredicted RBP13.52□□□□□ -0.25
MSH6-215ENST00000622629 MYH8P13535 1937 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 TRAPPC3O43617 180 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 ZNF606Q8WXB4 792 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 MMP19Q99542 508 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 FAM167BQ9BTA0 163 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 NEUROG2Q9H2A3 272 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 METTL5Q9NRN9 209 aaKnown RBP13.51□□□□□ -0.25
MSH6-215ENST00000622629 A8MXQ7 604 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 ZC3H11AO75152 810 aaKnown RBP eCLIP13.51□□□□□ -0.25
MSH6-215ENST00000622629 FAXCQ5TGI0 409 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 SLC9A9Q8IVB4 645 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 TMEM161BQ8NDZ6 487 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 HIPK4Q8NE63 616 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 FAM53CQ9NYF3 392 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 PSMC3IPQ9P2W1 217 aaPredicted RBP13.51□□□□□ -0.25
MSH6-215ENST00000622629 IGF2BP3O00425 579 aaKnown RBP eCLIP13.51□□□□□ -0.25
MSH6-215ENST00000622629 SERPINB6P35237 376 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 RFC5P40937 340 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 GARSP41250 739 aaKnown RBP13.51□□□□□ -0.25
MSH6-215ENST00000622629 NAMPTP43490 491 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 CLCN3P51790 818 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 GTF2BQ00403 316 aa13.51□□□□□ -0.25
MSH6-215ENST00000622629 FMO1Q01740 532 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms