RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, human

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-215	ENST00000607187	GUCY2F	P51841	1108 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	NDUFA8	P51970	172 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	MRPL58	Q14197	206 aa	Known RBP	10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	SLC8B1	Q6J4K2	584 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	GRAMD1C	Q8IYS0	662 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	KREMEN2	Q8NCW0	462 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	BEST2	Q8NFU1	509 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	SCFD1	Q8WVM8	642 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	KCNK17	Q96T54	332 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	CBWD1	Q9BRT8	395 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	FAM213A	Q9BRX8	229 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	ZDHHC7	Q9NXF8	308 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	NR2E1	Q9Y466	385 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	CDY1	Q9Y6F8	540 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	UBE4B	O95155	1302 aa		10.81	□□□□□ -0.68
CTSA-215	ENST00000607187	ANO9	A1A5B4	782 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	PIR	O00625	290 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	PPEF2	O14830	753 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	KIAA0391	O15091	583 aa	Known RBP	10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	TGFB1I1	O43294	461 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	DCX	O43602	365 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	KLRC4	O43908	158 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	MYL1	P05976	194 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	PAX3	P23760	479 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	WNT7B	P56706	349 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	LILRA4	P59901	499 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	ELOA	Q14241	798 aa	Known RBP	10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	BMT2	Q1RMZ1	405 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	C9orf57	Q5W0N0	161 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	ARMCX5	Q6P1M9	558 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	NT5DC4	Q86YG4	428 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	BRSK2	Q8IWQ3	736 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	EFCAB13	Q8IY85	973 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	FSIP1	Q8NA03	581 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	APPL2	Q8NEU8	664 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	ZNF707	Q96C28	371 aa	Predicted RBP	10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	SAAL1	Q96ER3	474 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	C1QTNF1	Q9BXJ1	281 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	PCIF1	Q9H4Z3	704 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	DPP3	Q9NY33	737 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	MUTYH	Q9UIF7	546 aa		10.8	□□□□□ -0.68
CTSA-215	ENST00000607187	GOLGA8IP	A6NC78	632 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	GOLGA8J	A6NMD2	632 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	C2CD4D	B7Z1M9	353 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187		H7C4K7	107 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	ABLIM3	O94929	683 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	OAZ2	O95190	189 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	C8A	P07357	584 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	HNRNPA1	P09651	372 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	SP100	P23497	879 aa	Predicted RBP	10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	HOXA9	P31269	272 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	SNRPF	P62306	86 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	ROR1	Q01973	937 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	UVSSA	Q2YD98	709 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	CTXN3	Q4LDR2	81 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	LIN9	Q5TKA1	542 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	CCDC149	Q6ZUS6	474 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	RTL10	Q7L3V2	364 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	GPD1L	Q8N335	351 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	ZNF461	Q8TAF7	563 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	SMG7	Q92540	1137 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	PRKD2	Q9BZL6	878 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	GOLPH3L	Q9H4A5	285 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	WDR6	Q9NNW5	1121 aa	Known RBP	10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	SLC39A2	Q9NP94	309 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	RBAK	Q9NYW8	714 aa	Predicted RBP	10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	FBXL5	Q9UKA1	691 aa		10.79	□□□□□ -0.68
CTSA-215	ENST00000607187	WDR27	A2RRH5	827 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	ZNF202	O95125	648 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	POU2F2	P09086	479 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	TYMP	P19971	482 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	YWHAH	Q04917	246 aa	Predicted RBP	10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	STK4	Q13043	487 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	NR1H3	Q13133	447 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	PSMD2	Q13200	908 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	KNOP1	Q1ED39	458 aa	Known RBP	10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	KMT5B	Q4FZB7	885 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	PPM1L	Q5SGD2	360 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	TMEM164	Q5U3C3	297 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	ZNF280D	Q6N043	979 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	DSTYK	Q6XUX3	929 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	KRBA2	Q6ZNG9	492 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	NELFCD	Q8IXH7	590 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	ZDHHC14	Q8IZN3	488 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	KIAA0895	Q8NCT3	520 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	SENP8	Q96LD8	212 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	KIAA1586	Q9HCI6	787 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	C11orf16	Q9NQ32	467 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	AGPAT3	Q9NRZ7	376 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	HSPBP1	Q9NZL4	362 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	CGN	Q9P2M7	1197 aa	Known RBP	10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	ZMIZ1	Q9ULJ6	1067 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	ZDBF2	Q9HCK1	2354 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	CLUH	O75153	1309 aa		10.78	□□□□□ -0.68
CTSA-215	ENST00000607187	ZNF233	A6NK53	670 aa		10.77	□□□□□ -0.69
CTSA-215	ENST00000607187	CYP11A1	P05108	521 aa		10.77	□□□□□ -0.69
CTSA-215	ENST00000607187	ATF2	P15336	505 aa		10.77	□□□□□ -0.69
CTSA-215	ENST00000607187	TFAM	Q00059	246 aa	Known RBP	10.77	□□□□□ -0.69
CTSA-215	ENST00000607187	TPGS2	Q68CL5	300 aa		10.77	□□□□□ -0.69
CTSA-215	ENST00000607187	HS2ST1	Q7LGA3	356 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms