RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PRKD2Q9BZL6 878 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 KCTD10Q9H3F6 313 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 MAPK8IP1Q9UQF2 711 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 TIMM13Q9Y5L4 95 aaPredicted RBP20.86■□□□□ 0.93
UPF1-212ENST00000601689 NCOR1O75376 2440 aa20.86■□□□□ 0.93
UPF1-212ENST00000601689 CLSTN1O94985 981 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 ATF2P15336 505 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 BFSP1Q12934 665 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 OTOP3Q7RTS5 596 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 ELMOD1Q8N336 334 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 MFSD14AQ96MC6 490 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 CYP4F11Q9HBI6 524 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 POLIQ9UNA4 740 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 USTQ9Y2C2 406 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 PCDHA5Q9Y5H7 936 aa20.85■□□□□ 0.93
UPF1-212ENST00000601689 GOLGA6L22H0YM25 854 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 PPEF2O14830 753 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 RFPL2O75678 378 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 CYP11A1P05108 521 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 KRT13P13646 458 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 ALADP13716 330 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 NR2F2P24468 414 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 NFIL3Q16649 462 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 TMEM86AQ8N2M4 240 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 TDRD5Q8NAT2 981 aaKnown RBP20.84■□□□□ 0.93
UPF1-212ENST00000601689 SLC7A14Q8TBB6 771 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 POMKQ9H5K3 350 aa20.84■□□□□ 0.93
UPF1-212ENST00000601689 AFF4Q9UHB7 1163 aaKnown RBP20.84■□□□□ 0.93
UPF1-212ENST00000601689 WDR27A2RRH5 827 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 C19orf67A6NJJ6 358 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 MAPK13O15264 365 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 ADAM12O43184 909 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 TBC1D4O60343 1298 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 GADD45BO75293 160 aaPredicted RBP20.83■□□□□ 0.93
UPF1-212ENST00000601689 ABLIM3O94929 683 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 WEE2P0C1S8 567 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 MYL7Q01449 175 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 SMARCB1Q12824 385 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 ADAM9Q13443 819 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 BIRC3Q13489 604 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 LMBRD2Q68DH5 695 aaPredicted RBP20.83■□□□□ 0.93
UPF1-212ENST00000601689 DPH6Q7L8W6 267 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 TRAPPC11Q7Z392 1133 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 SPATA18Q8TC71 538 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 HPDLQ96IR7 371 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 DMAC2Q9NW81 257 aa20.83■□□□□ 0.93
UPF1-212ENST00000601689 LOC730098B7Z3J9 87 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 PSMA7O14818 248 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 CETN3O15182 167 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 SPTLC1O15269 473 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 PSMC2P35998 433 aaKnown RBP20.82■□□□□ 0.92
UPF1-212ENST00000601689 WNT7BP56706 349 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 TSPY1Q01534 308 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 ADCY1Q08828 1119 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 PLD1Q13393 1074 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 EDRF1Q3B7T1 1238 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 COBLL1Q53SF7 1204 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 IQCEQ6IPM2 695 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 RSPO2Q6UXX9 243 aaPredicted RBP20.82■□□□□ 0.92
UPF1-212ENST00000601689 INTS8Q75QN2 995 aaKnown RBP20.82■□□□□ 0.92
UPF1-212ENST00000601689 DCP1BQ8IZD4 617 aaKnown RBP20.82■□□□□ 0.92
UPF1-212ENST00000601689 SYAP1Q96A49 352 aaPredicted RBP20.82■□□□□ 0.92
UPF1-212ENST00000601689 WDR6Q9NNW5 1121 aaKnown RBP20.82■□□□□ 0.92
UPF1-212ENST00000601689 SNX9Q9Y5X1 595 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 C2orf16Q68DN1 1984 aa20.82■□□□□ 0.92
UPF1-212ENST00000601689 POU2F2P09086 479 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 LHX1P48742 406 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 GPR17Q13304 367 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 TCEAL8Q8IYN2 117 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 TOP6BLQ8N6T0 577 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 OR5B17Q8NGF7 314 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 SPATA20Q8TB22 786 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 TMC2Q8TDI7 906 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 PARD3BQ8TEW8 1205 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 GDAP2Q9NXN4 497 aa20.81■□□□□ 0.92
UPF1-212ENST00000601689 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.81■□□□□ 0.92
UPF1-212ENST00000601689 CLUHO75153 1309 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 IKBKBO14920 756 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 CCL16O15467 120 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 EPB41P11171 864 aaKnown RBP20.8■□□□□ 0.92
UPF1-212ENST00000601689 ATICP31939 592 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 PRCPP42785 496 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 ALDH1A3P47895 512 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 TNNC1P63316 161 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 WSCD1Q658N2 575 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 FAM186BQ8IYM0 893 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 SMYD4Q8IYR2 804 aaPredicted RBP20.8■□□□□ 0.92
UPF1-212ENST00000601689 TMEM130Q8N3G9 435 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 C2orf15Q8WU43 125 aaKnown RBP20.8■□□□□ 0.92
UPF1-212ENST00000601689 ZNF512Q96ME7 567 aaPredicted RBP20.8■□□□□ 0.92
UPF1-212ENST00000601689 MMS19Q96T76 1030 aa20.8■□□□□ 0.92
UPF1-212ENST00000601689 C5orf42Q9H799 3197 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 PAPLNO95428 1278 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 P4HA1P13674 534 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 SP100P23497 879 aaPredicted RBP20.79■□□□□ 0.92
UPF1-212ENST00000601689 PCSK1P29120 753 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 GBP2P32456 591 aaPredicted RBP20.79■□□□□ 0.92
UPF1-212ENST00000601689 TUFMP49411 452 aaKnown RBP20.79■□□□□ 0.92
UPF1-212ENST00000601689 VAMP7P51809 220 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 FKBP3Q00688 224 aaKnown RBP20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms