RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SIX4Q9UIU6 781 aa18.17■□□□□ 0.5
TRIM28-215ENST00000601150 CUL9Q8IWT3 2517 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 BDP1A6H8Y1 2624 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 OR6C75A6NL08 312 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 ABLIM3O94929 683 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 C8AP07357 584 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 BFSP1Q12934 665 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 COBLL1Q53SF7 1204 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 CEP135Q66GS9 1140 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 RTL10Q7L3V2 364 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 METTL23Q86XA0 190 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 FEZF2Q8TBJ5 459 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 CD320Q9NPF0 282 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 TSHZ2Q9NRE2 1034 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 FRMD4BQ9Y2L6 1034 aa18.16■□□□□ 0.5
TRIM28-215ENST00000601150 WDR27A2RRH5 827 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 HNRNPA1P09651 372 aaKnown RBP eCLIP18.15■□□□□ 0.5
TRIM28-215ENST00000601150 CPB1P15086 417 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 NR2F2P24468 414 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 RPL13P26373 211 aaKnown RBP18.15■□□□□ 0.5
TRIM28-215ENST00000601150 HOXA9P31269 272 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 PRCPP42785 496 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 CASP4P49662 377 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 UVSSAQ2YD98 709 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 ZCWPW2Q504Y3 356 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 PPM1LQ5SGD2 360 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 TPGS2Q68CL5 300 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 CCDC149Q6ZUS6 474 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 TRAPPC11Q7Z392 1133 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 SLC7A14Q8TBB6 771 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 SMG7Q92540 1137 aaKnown RBP18.15■□□□□ 0.5
TRIM28-215ENST00000601150 ZNF707Q96C28 371 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-215ENST00000601150 RPGRIP1Q96KN7 1286 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 PRKD2Q9BZL6 878 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 GZF1Q9H116 711 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-215ENST00000601150 PIDD1Q9HB75 910 aa18.15■□□□□ 0.5
TRIM28-215ENST00000601150 LOC730098B7Z3J9 87 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 ATF2P15336 505 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 ELF1P32519 619 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 MYO1EQ12965 1108 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 EDRF1Q3B7T1 1238 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 SCARA3Q6AZY7 606 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 THEM5Q8N1Q8 247 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 PLEKHO2Q8TD55 490 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 PARD3BQ8TEW8 1205 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 HPDLQ96IR7 371 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 GDAP2Q9NXN4 497 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 AFF4Q9UHB7 1163 aaKnown RBP18.14■□□□□ 0.49
TRIM28-215ENST00000601150 MAN1B1Q9UKM7 699 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 MAFFQ9ULX9 164 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 NR2E1Q9Y466 385 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 C5orf42Q9H799 3197 aa18.14■□□□□ 0.49
TRIM28-215ENST00000601150 PRRG1O14668 218 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 MAPK13O15264 365 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 HUS1O60921 280 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 XYLBO75191 536 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 AP3M2P53677 418 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 CLDN10P78369 228 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 ADAM9Q13443 819 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 STIM1Q13586 685 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 WSCD1Q658N2 575 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 TMC2Q8TDI7 906 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 ZNF516Q92618 1163 aa18.13■□□□□ 0.49
TRIM28-215ENST00000601150 VCANP13611 3396 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 LRRIQ3A6PVS8 624 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-215ENST00000601150 PHACTR2O75167 634 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 POU2F2P09086 479 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 PPP1R2P41236 205 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 ADCY1Q08828 1119 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 ISM2Q6H9L7 571 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 CENPPQ6IPU0 288 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 RNF19BQ6ZMZ0 732 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 FAM186BQ8IYM0 893 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 TCEAL8Q8IYN2 117 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 ADSSL1Q8N142 457 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 PDCL2Q8N4E4 241 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 GBP4Q96PP9 640 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 TSG101Q99816 390 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 CYP4F11Q9HBI6 524 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 WDR6Q9NNW5 1121 aaKnown RBP18.12■□□□□ 0.49
TRIM28-215ENST00000601150 L1RE1Q9UN81 338 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 SNX9Q9Y5X1 595 aa18.12■□□□□ 0.49
TRIM28-215ENST00000601150 DOCK6Q96HP0 2047 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 PSMA7O14818 248 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 CCL16O15467 120 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 AKAP3O75969 853 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 SEC24AO95486 1093 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 CST3P01034 146 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-215ENST00000601150 OR4Q2P0C623 313 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 PSMC2P35998 433 aaKnown RBP18.11■□□□□ 0.49
TRIM28-215ENST00000601150 GPR17Q13304 367 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 TRPC3Q13507 836 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 INTS8Q75QN2 995 aaKnown RBP18.11■□□□□ 0.49
TRIM28-215ENST00000601150 TMEM86AQ8N2M4 240 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 OR10T2Q8NGX3 314 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 RTP3Q9BQQ7 232 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 USTQ9Y2C2 406 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 CLUHO75153 1309 aa18.11■□□□□ 0.49
TRIM28-215ENST00000601150 BIN1O00499 593 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 CETN3O15182 167 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms