RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SCN1AP35498 2009 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 MYO7AQ13402 2215 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 PER2O15055 1255 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 PMM2O15305 246 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 TEX28O15482 410 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 TBC1D4O60343 1298 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 CLASP2O75122 1294 aaKnown RBP20.78■□□□□ 0.92
UPF1-209ENST00000600310 PIK3CAP42336 1068 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 NRIP1P48552 1158 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 DPH6Q7L8W6 267 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 TOP6BLQ8N6T0 577 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 TAF4BQ92750 862 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 MAGEC2Q9UBF1 373 aaPredicted RBP20.78■□□□□ 0.92
UPF1-209ENST00000600310 COQ4Q9Y3A0 265 aa20.78■□□□□ 0.92
UPF1-209ENST00000600310 FSD2A1L4K1 749 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 NCK2O43639 380 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 HUS1O60921 280 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 N4BP1O75113 896 aaKnown RBP20.77■□□□□ 0.92
UPF1-209ENST00000600310 ASS1P00966 412 aaKnown RBP20.77■□□□□ 0.92
UPF1-209ENST00000600310 ADH1AP07327 375 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 FMO5P49326 533 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 NDUFV1P49821 464 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 KCNH2Q12809 1159 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 NCAPHQ15003 741 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 CCDC85BQ15834 202 aaPredicted RBP20.77■□□□□ 0.92
UPF1-209ENST00000600310 ZNF699Q32M78 642 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 WDR72Q3MJ13 1102 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 WSCD1Q658N2 575 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 ZNF280DQ6N043 979 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 LIMS2Q7Z4I7 341 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 METTL23Q86XA0 190 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 CREBRFQ8IUR6 639 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 PDCL2Q8N4E4 241 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 FBXL13Q8NEE6 735 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 MAFAQ8NHW3 353 aaPredicted RBP20.77■□□□□ 0.92
UPF1-209ENST00000600310 SPATA18Q8TC71 538 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 CLSTN3Q9BQT9 956 aa20.77■□□□□ 0.92
UPF1-209ENST00000600310 OXCT2Q9BYC2 517 aaPredicted RBP20.77■□□□□ 0.92
UPF1-209ENST00000600310 P4HA2O15460 535 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 FAM163BP0C2L3 166 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 RPL17P18621 184 aaKnown RBP20.76■□□□□ 0.91
UPF1-209ENST00000600310 KLRC2P26717 231 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 GTF2F1P35269 517 aaKnown RBP eCLIP20.76■□□□□ 0.91
UPF1-209ENST00000600310 MTIF2P46199 727 aaKnown RBP20.76■□□□□ 0.91
UPF1-209ENST00000600310 ZNF165P49910 485 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 COL19A1Q14993 1142 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 SOWAHAQ2M3V2 549 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 CTXN3Q4LDR2 81 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 ZNF667Q5HYK9 610 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 OVOS1Q6IE37 1185 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 RSPO2Q6UXX9 243 aaPredicted RBP20.76■□□□□ 0.91
UPF1-209ENST00000600310 PPFIBP1Q86W92 1011 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 TMEM86AQ8N2M4 240 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 EFHBQ8N7U6 833 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 SLC22A17Q8WUG5 538 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 SEMA4DQ92854 862 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 IGFLR1Q9H665 355 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 FANCLQ9NW38 375 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 RAB20Q9NX57 234 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 FBXL5Q9UKA1 691 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 L1RE1Q9UN81 338 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 CUL9Q8IWT3 2517 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 VWA8A3KMH1 1905 aa20.76■□□□□ 0.91
UPF1-209ENST00000600310 ATG2AQ2TAZ0 1938 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 KCNJ18B7U540 433 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 ADAM12O43184 909 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 C1RP00736 705 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 AFPP02771 609 aaKnown RBP20.75■□□□□ 0.91
UPF1-209ENST00000600310 EEF1GP26641 437 aaKnown RBP20.75■□□□□ 0.91
UPF1-209ENST00000600310 TNNC1P63316 161 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 MYL7Q01449 175 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 KCNC3Q14003 757 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 RAB33AQ14088 237 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 KCNJ12Q14500 433 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 CTC1Q2NKJ3 1217 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 HSP90AA4PQ58FG1 418 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 CDKAL1Q5VV42 579 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 SLC8B1Q6J4K2 584 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 PPM1EQ8WY54 764 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 PI4K2AQ9BTU6 479 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 IMPG2Q9BZV3 1241 aa20.75■□□□□ 0.91
UPF1-209ENST00000600310 NXF1Q9UBU9 619 aaKnown RBP20.75■□□□□ 0.91
UPF1-209ENST00000600310 EYSQ5T1H1 3165 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 OR6C75A6NL08 312 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 SMTNL1A8MU46 457 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 GABRDO14764 452 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 LRRN2O75325 713 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 CAVIN2O95810 425 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 OR1D2P34982 312 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 CLCN4P51793 760 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 NOP14P78316 857 aaKnown RBP20.74■□□□□ 0.91
UPF1-209ENST00000600310 ADAM15Q13444 863 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 MAN2A1Q16706 1144 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 TCP11X2Q5H9J9 407 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 TMEM184AQ6ZMB5 413 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 DHX40Q8IX18 779 aaKnown RBP20.74■□□□□ 0.91
UPF1-209ENST00000600310 ADGRF2Q8IZF7 708 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 THEM5Q8N1Q8 247 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 AOPEPQ8N6M6 819 aa20.74■□□□□ 0.91
UPF1-209ENST00000600310 CCDC150Q8NCX0 1101 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms