RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZNF280DQ6N043 979 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 PKN3Q6P5Z2 889 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 PRR23BQ6ZRT6 265 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 APBB1IPQ7Z5R6 666 aaPredicted RBP6.67□□□□□ -1.34
VRK3-220ENST00000600259 DNAJB7Q7Z6W7 309 aaPredicted RBP6.67□□□□□ -1.34
VRK3-220ENST00000600259 RALGPS2Q86X27 583 aaPredicted RBP6.67□□□□□ -1.34
VRK3-220ENST00000600259 TTC9BQ8N6N2 239 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 ATAD1Q8NBU5 361 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 APPL2Q8NEU8 664 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 FBXO18Q8NFZ0 1043 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 SPIRE2Q8WWL2 714 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 ZFYVE19Q96K21 471 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 TMEM209Q96SK2 561 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 C17orf75Q9HAS0 396 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 PLEKHA5Q9HAU0 1116 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 IL21Q9HBE4 155 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 KMT5AQ9NQR1 393 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 ASAH2Q9NR71 780 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 OBP2AQ9NY56 170 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 GTSE1Q9NYZ3 720 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 LRWD1Q9UFC0 647 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 RAB23Q9ULC3 237 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 SLC27A5Q9Y2P5 690 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 NUB1Q9Y5A7 615 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 PHLPP2Q6ZVD8 1323 aa6.67□□□□□ -1.34
VRK3-220ENST00000600259 ZFYVE26Q68DK2 2539 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 MTMR11A4FU01 709 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 OTOL1A6NHN0 477 aaPredicted RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 OR6C75A6NL08 312 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 LACTBL1A8MY62 500 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 SOAT2O75908 522 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PRAMEF12O95522 483 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 ZNF806P0C7X5 589 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 CXCL8P10145 99 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 MAPTP10636 758 aaKnown RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 TYMPP19971 482 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 CYP3A5P20815 502 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 GUCY2CP25092 1073 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 U2AF2P26368 475 aaKnown RBP eCLIP6.66□□□□□ -1.34
VRK3-220ENST00000600259 MARCKSP29966 332 aaPredicted RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 MCM4P33991 863 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 TRAPPC10P48553 1259 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 GUCY2FP51841 1108 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 NEK4P51957 841 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 LILRA4P59901 499 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 SHC2P98077 582 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 YWHAHQ04917 246 aaPredicted RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 SPAG1Q07617 926 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 TNK2Q07912 1038 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 TRIM29Q14134 588 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 MYBPC2Q14324 1141 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PON2Q15165 354 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 SF3A2Q15428 464 aaKnown RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 ARHGAP29Q52LW3 1261 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 ARSHQ5FYA8 562 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PLA2G2CQ5R387 149 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 HYIQ5T013 277 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 HAUS3Q68CZ6 603 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 HEATR6Q6AI08 1181 aaKnown RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 C1orf228Q6PIY5 440 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 ZPBP2Q6X784 338 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 TMEM150AQ86TG1 271 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 ELMOD1Q8N336 334 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 SYNPOQ8N3V7 929 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 TTC8Q8TAM2 541 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 CSGALNACT1Q8TDX6 532 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PSMG2Q969U7 264 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PGLYRP2Q96PD5 576 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PNMA5Q96PV4 448 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 FAM83CQ9BQN1 747 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 TCHPQ9BT92 498 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 SLC46A2Q9BY10 475 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 OXCT2Q9BYC2 517 aaPredicted RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 FBRSL1Q9HCM7 1045 aaKnown RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 POLR3BQ9NW08 1133 aaPredicted RBP6.66□□□□□ -1.34
VRK3-220ENST00000600259 HSFX1Q9UBD0 423 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 DNM3Q9UQ16 869 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 ASB3Q9Y575 518 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 PCDHB6Q9Y5E3 794 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 ATRXP46100 2492 aa6.66□□□□□ -1.34
VRK3-220ENST00000600259 CCDC163A0A0D9SF12 145 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 ANO9A1A5B4 782 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 PIRO00625 290 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 AXIN1O15169 862 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 CLDN3O15551 220 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 FOXD2O60548 495 aaPredicted RBP6.65□□□□□ -1.34
VRK3-220ENST00000600259 EPN2O95208 641 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 F11P03951 625 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 CYP11A1P05108 521 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 CLTAP09496 248 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 HARSP12081 509 aaKnown RBP6.65□□□□□ -1.34
VRK3-220ENST00000600259 PLS3P13797 630 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 CPB1P15086 417 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 GABRR2P28476 465 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 TNFSF9P41273 254 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 KPNA1P52294 538 aaPredicted RBP6.65□□□□□ -1.34
VRK3-220ENST00000600259 EPHB3P54753 998 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 DMP1Q13316 513 aaPredicted RBP6.65□□□□□ -1.34
VRK3-220ENST00000600259 LRRC32Q14392 662 aa6.65□□□□□ -1.34
VRK3-220ENST00000600259 NOLC1Q14978 699 aaKnown RBP eCLIP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms