RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 DPH6Q7L8W6 267 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 GPIHBP1Q8IV16 184 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 CRIPAKQ8N1N5 446 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 TOP6BLQ8N6T0 577 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 UBR7Q8N806 425 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 HAUS4Q9H6D7 363 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 CNTN6Q9UQ52 1028 aa16.52■□□□□ 0.24
UPF1-206ENST00000598471 LTBP2Q14767 1821 aa16.52■□□□□ 0.23
UPF1-206ENST00000598471 ZBBXA8MT70 800 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 CYP26A1O43174 497 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 B3GAT3O94766 335 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 FAM163BP0C2L3 166 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 EIF4A3P38919 411 aaKnown RBP16.51■□□□□ 0.23
UPF1-206ENST00000598471 DSTYKQ6XUX3 929 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 ZSCAN30Q86W11 494 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 APPL2Q8NEU8 664 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 TOP1MTQ969P6 601 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 MTIF3Q9H2K0 278 aaKnown RBP16.51■□□□□ 0.23
UPF1-206ENST00000598471 LUC7LQ9NQ29 371 aaKnown RBP16.51■□□□□ 0.23
UPF1-206ENST00000598471 BARX2Q9UMQ3 279 aaPredicted RBP16.51■□□□□ 0.23
UPF1-206ENST00000598471 TTC3P53804 2025 aa16.51■□□□□ 0.23
UPF1-206ENST00000598471 TDRD15B5MCY1 1934 aaKnown RBP16.51■□□□□ 0.23
UPF1-206ENST00000598471 CARNS1A5YM72 827 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 TMEM189-UBE2V1I3L0A0 370 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 SPTLC1O15269 473 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 CCP110O43303 1012 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 TACC1O75410 805 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 NDUFA10O95299 355 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 MSNP26038 577 aaKnown RBP16.5■□□□□ 0.23
UPF1-206ENST00000598471 MAGEA10P43363 369 aaPredicted RBP16.5■□□□□ 0.23
UPF1-206ENST00000598471 RAP1GAPP47736 663 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 OR1G1P47890 313 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 KIF11P52732 1056 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 KRT83P78385 493 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 INCA1Q0VD86 236 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 BMS1Q14692 1282 aaKnown RBP16.5■□□□□ 0.23
UPF1-206ENST00000598471 SPA17Q15506 151 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 RAD9BQ6WBX8 426 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 OTOP2Q7RTS6 562 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 ZNF677Q86XU0 584 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 COLGALT2Q8IYK4 626 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 TMEM175Q9BSA9 504 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.5■□□□□ 0.23
UPF1-206ENST00000598471 SNX25Q9H3E2 840 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 PYCARDQ9ULZ3 195 aa16.5■□□□□ 0.23
UPF1-206ENST00000598471 EPN1Q9Y6I3 576 aaPredicted RBP16.5■□□□□ 0.23
UPF1-206ENST00000598471 EIF3CLB5ME19 914 aaKnown RBP16.49■□□□□ 0.23
UPF1-206ENST00000598471 CYB561D2O14569 222 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 CILPO75339 1184 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 DGKIO75912 1065 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 DDHD2O94830 711 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 PLEKP08567 350 aaPredicted RBP16.49■□□□□ 0.23
UPF1-206ENST00000598471 PAEPP09466 180 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 ODC1P11926 461 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 CYP11B1P15538 503 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 TNFAIP3P21580 790 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 GNA15P30679 374 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 CLCN1P35523 988 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 GATMP50440 423 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 ZNF132P52740 706 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 CDH8P55286 799 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 PRPF38BQ5VTL8 546 aaKnown RBP16.49■□□□□ 0.23
UPF1-206ENST00000598471 ZNF365Q70YC5 407 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 ZNF571Q7Z3V5 609 aaPredicted RBP16.49■□□□□ 0.23
UPF1-206ENST00000598471 SLC47A2Q86VL8 602 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 UNC93AQ86WB7 457 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 ZNF280BQ86YH2 543 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 ADGRF2Q8IZF7 708 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 TMEM86AQ8N2M4 240 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 TXLNBQ8N3L3 684 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 SPATA18Q8TC71 538 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 EPS8L1Q8TE68 723 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 SENP8Q96LD8 212 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 EIF3CQ99613 913 aaKnown RBP16.49■□□□□ 0.23
UPF1-206ENST00000598471 AGPAT1Q99943 283 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 GDF15Q99988 308 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 COLEC11Q9BWP8 271 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 NT5C1AQ9BXI3 368 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 SDCBP2Q9H190 292 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 CACNG4Q9UBN1 327 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 DSEQ9UL01 958 aa16.49■□□□□ 0.23
UPF1-206ENST00000598471 ZSCAN12O43309 604 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 TRAPPC3O43617 180 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 ALDH2P05091 517 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 CCDC175P0C221 793 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 AARSP49588 968 aaKnown RBP eCLIP16.48■□□□□ 0.234e-6■■■■□ 24
UPF1-206ENST00000598471 DEFB103AP81534 67 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 CDR2Q01850 454 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 MTF1Q14872 753 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 SLC18A3Q16572 532 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 SOWAHAQ2M3V2 549 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 PAN2Q504Q3 1202 aaKnown RBP16.48■□□□□ 0.23
UPF1-206ENST00000598471 TMEM240Q5SV17 173 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 METTL23Q86XA0 190 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 CMTR2Q8IYT2 770 aaKnown RBP16.48■□□□□ 0.23
UPF1-206ENST00000598471 OR6B3Q8NGW1 331 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 TMEM176AQ96HP8 235 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 PAAF1Q9BRP4 392 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 PDCL3Q9H2J4 239 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 NRDE2Q9H7Z3 1164 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms