RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RBBP8NLQ8NC74 664 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-209ENST00000597423 BADQ92934 168 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CASD1Q96PB1 797 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 ARID3AQ99856 593 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 AGPAT1Q99943 283 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TMEM175Q9BSA9 504 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 PDCL3Q9H2J4 239 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 MTIF3Q9H2K0 278 aaKnown RBP16.29■□□□□ 0.2
TRIM28-209ENST00000597423 GOLGA2P5Q9HBQ8 144 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 TBC1D13Q9NVG8 400 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 DSEQ9UL01 958 aa16.29■□□□□ 0.2
TRIM28-209ENST00000597423 BARX2Q9UMQ3 279 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-209ENST00000597423 CITO14578 2027 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 GOLGA6L9A6NEM1 432 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 CYB561D2O14569 222 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 CYP11B1P15538 503 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 GNL1P36915 607 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-209ENST00000597423 KIF11P52732 1056 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 DSC1Q08554 894 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 E4F1Q66K89 784 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-209ENST00000597423 SCARA3Q6AZY7 606 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 PPP1R2P3Q6NXS1 205 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 RAD9BQ6WBX8 426 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 LRRC43Q8N309 656 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 SPATA18Q8TC71 538 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 KIAA1524Q8TCG1 905 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 ELMO3Q96BJ8 720 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 NR2E3Q9Y5X4 410 aa16.28■□□□□ 0.2
TRIM28-209ENST00000597423 DNAH12Q6ZR08 3092 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 PPEF2O14830 753 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 TADA2AO75478 443 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 DGKIO75912 1065 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 PNMA6AP0CW24 399 aaPredicted RBP16.27■□□□□ 0.2
TRIM28-209ENST00000597423 ACRP10323 421 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 OR1G1P47890 313 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 LHX1P48742 406 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 CDH8P55286 799 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 CDR2Q01850 454 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 INCA1Q0VD86 236 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 SLC18A3Q16572 532 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 TRIM72Q6ZMU5 477 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 ZNF571Q7Z3V5 609 aaPredicted RBP16.27■□□□□ 0.2
TRIM28-209ENST00000597423 COLGALT2Q8IYK4 626 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 UBR7Q8N806 425 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 OR6B3Q8NGW1 331 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 TMEM176AQ96HP8 235 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 SENP8Q96LD8 212 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 NT5C1AQ9BXI3 368 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 SMYD3Q9H7B4 428 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 SEPT11Q9NVA2 429 aaKnown RBP16.27■□□□□ 0.2
TRIM28-209ENST00000597423 ADAMTS1Q9UHI8 967 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 PUF60Q9UHX1 559 aaKnown RBP16.27■□□□□ 0.2
TRIM28-209ENST00000597423 PYCARDQ9ULZ3 195 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 FAN1Q9Y2M0 1017 aa16.27■□□□□ 0.2
TRIM28-209ENST00000597423 ZBBXA8MT70 800 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 TMEM189-UBE2V1I3L0A0 370 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 CILPO75339 1184 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 DDHD2O94830 711 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 KIF4AO95239 1232 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 LCA5LO95447 670 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 PLEKP08567 350 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-209ENST00000597423 ODC1P11926 461 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 GNA15P30679 374 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 MAGEA1P43355 309 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF132P52740 706 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 WDR5P61964 334 aaKnown RBP16.26■□□□□ 0.19
TRIM28-209ENST00000597423 STILQ15468 1287 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 SOWAHAQ2M3V2 549 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 ASTE1Q2TB18 679 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-209ENST00000597423 COL13A1Q5TAT6 717 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF365Q70YC5 407 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 OTOP2Q7RTS6 562 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 KIAA1328Q86T90 577 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 SLC47A2Q86VL8 602 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 ZNF280BQ86YH2 543 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 EPS8L1Q8TE68 723 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 VWCEQ96DN2 955 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 TNIP3Q96KP6 325 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 HEXIM2Q96MH2 286 aaKnown RBP16.26■□□□□ 0.19
TRIM28-209ENST00000597423 KCND1Q9NSA2 647 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 ADGRG1Q9Y653 693 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 RALGAPA2Q2PPJ7 1873 aa16.26■□□□□ 0.19
TRIM28-209ENST00000597423 A8MXQ7 604 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 ESPNB1AK53 854 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 RBAK-RBAKDNI3L0D1 243 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 SPTLC1O15269 473 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 THAP12O43422 761 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 VDRP11473 427 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 GZMAP12544 262 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 WARSP23381 471 aaKnown RBP16.25■□□□□ 0.19
TRIM28-209ENST00000597423 RAP1GAPP47736 663 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 ALDH7A1P49419 539 aaKnown RBP16.25■□□□□ 0.19
TRIM28-209ENST00000597423 AARSP49588 968 aaKnown RBP eCLIP16.25■□□□□ 0.19
TRIM28-209ENST00000597423 NDST1P52848 882 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 ELAVL2Q12926 359 aaKnown RBP16.25■□□□□ 0.19
TRIM28-209ENST00000597423 MTF1Q14872 753 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 CCDC122Q5T0U0 273 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 LIMS2Q7Z4I7 341 aa16.25■□□□□ 0.19
TRIM28-209ENST00000597423 NOP9Q86U38 636 aaKnown RBP16.25■□□□□ 0.19
TRIM28-209ENST00000597423 GPIHBP1Q8IV16 184 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms