RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 OAZ2O95190 189 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 ASGR2P07307 311 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 ODC1P11926 461 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 GBP2P32456 591 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-205ENST00000595028 SYKP43405 635 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 NUCB2P80303 420 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 MTMR3Q13615 1198 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 TPGS2Q68CL5 300 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 GET4Q7L5D6 327 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-205ENST00000595028 USP37Q86T82 979 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 FSIP1Q8NA03 581 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 NOC3LQ8WTT2 800 aaKnown RBP16.33■□□□□ 0.2
TRIM28-205ENST00000595028 SENP8Q96LD8 212 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 OXCT2Q9BYC2 517 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-205ENST00000595028 AGPAT3Q9NRZ7 376 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 HSPBP1Q9NZL4 362 aa16.33■□□□□ 0.2
TRIM28-205ENST00000595028 FRYLO94915 3013 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 ARHGEF37A1IGU5 675 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 TGFB1I1O43294 461 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 MYL1P05976 194 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 CPB1P15086 417 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 ATF2P15336 505 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 TAF6P49848 677 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 NDUFA8P51970 172 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 TFAMQ00059 246 aaKnown RBP16.32■□□□□ 0.2
TRIM28-205ENST00000595028 GRASPQ7Z6J2 395 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-205ENST00000595028 CBWD2Q8IUF1 395 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 NELFCDQ8IXH7 590 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 TCEAL8Q8IYN2 117 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 ZNF560Q96MR9 790 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 MYADMQ96S97 322 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 GOLPH3LQ9H4A5 285 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 GDPD2Q9HCC8 539 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 SLC39A2Q9NP94 309 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 EXOC1Q9NV70 894 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 EPS15L1Q9UBC2 864 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 LIMD1Q9UGP4 676 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 AFF4Q9UHB7 1163 aaKnown RBP16.32■□□□□ 0.2
TRIM28-205ENST00000595028 POLIQ9UNA4 740 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 INSL5Q9Y5Q6 135 aa16.32■□□□□ 0.2
TRIM28-205ENST00000595028 OR6C75A6NL08 312 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 PRRG1O14668 218 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 CYP11A1P05108 521 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 FSHRP23945 695 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 ELF1P32519 619 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 SNRPFP62306 86 aaKnown RBP16.31■□□□□ 0.2
TRIM28-205ENST00000595028 OVOS1Q6IE37 1185 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 HS2ST1Q7LGA3 356 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 FRMD5Q7Z6J6 570 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 ADSSL1Q8N142 457 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 C1orf127Q8N9H9 656 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 KIAA0895Q8NCT3 520 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 FAM84AQ96KN4 292 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 CYP4F11Q9HBI6 524 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 PDE11AQ9HCR9 933 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.31■□□□□ 0.2
TRIM28-205ENST00000595028 MAFFQ9ULX9 164 aa16.31■□□□□ 0.2
TRIM28-205ENST00000595028 KMT2BQ9UMN6 2715 aaPredicted RBP16.31■□□□□ 0.2
TRIM28-205ENST00000595028 NCOR2Q9Y618 2525 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 ZNF233A6NK53 670 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 SEC24AO95486 1093 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 LRG1P02750 347 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 ITGB3P05106 788 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 OR4Q2P0C623 313 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 POLR2BP30876 1174 aaKnown RBP16.3■□□□□ 0.2
TRIM28-205ENST00000595028 PNPLA4P41247 253 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 NTHL1P78549 312 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 ADCY1Q08828 1119 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 MYBPC2Q14324 1141 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 SV2CQ496J9 727 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 KMT5BQ4FZB7 885 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 UBALD2Q8IYN6 164 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 CACTINQ8WUQ7 758 aaKnown RBP16.3■□□□□ 0.2
TRIM28-205ENST00000595028 NKD2Q969F2 451 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-205ENST00000595028 MTMR12Q9C0I1 747 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 KIAA1586Q9HCI6 787 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 HCFC1R1Q9NWW0 138 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 CGNQ9P2M7 1197 aaKnown RBP16.3■□□□□ 0.2
TRIM28-205ENST00000595028 ITGA11Q9UKX5 1188 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 DSEQ9UL01 958 aa16.3■□□□□ 0.2
TRIM28-205ENST00000595028 PTPRJQ12913 1337 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 TULP1O00294 542 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-205ENST00000595028 CLIC2O15247 247 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 VNN2O95498 520 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 TMEM191BP0C7N4 346 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 PRR29P0C7W0 189 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 CYP2J2P51589 502 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 STK4Q13043 487 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 SURF1Q15526 300 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 SNRNP35Q16560 246 aaKnown RBP16.29■□□□□ 0.2
TRIM28-205ENST00000595028 KNOP1Q1ED39 458 aaKnown RBP16.29■□□□□ 0.2
TRIM28-205ENST00000595028 PABPC1LQ4VXU2 614 aaKnown RBP16.29■□□□□ 0.2
TRIM28-205ENST00000595028 LMBRD2Q68DH5 695 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-205ENST00000595028 RNF19BQ6ZMZ0 732 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 KRBA2Q6ZNG9 492 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 C12orf56Q8IXR9 622 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 LRRC52Q8N7C0 313 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 TMEM105Q8N8V8 129 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 XXYLT1Q8NBI6 393 aa16.29■□□□□ 0.2
TRIM28-205ENST00000595028 OR10T2Q8NGX3 314 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms