RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 SLC39A2Q9NP94 309 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 CEP72Q9P209 647 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 IGSF9Q9P2J2 1179 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 CDH7Q9ULB5 785 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 MAFFQ9ULX9 164 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 DUSP12Q9UNI6 340 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 ARIH1Q9Y4X5 557 aaPredicted RBP16.39■□□□□ 0.21
CLIP3-202ENST00000585466 CACNA1HO95180 2353 aa16.39■□□□□ 0.21
CLIP3-202ENST00000585466 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 A0A1W2PQ27 194 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 A0A1W2PQ64 194 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 A0A1W2PQD8 194 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 OR6C75A6NL08 312 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 KIAA0391O15091 583 aaKnown RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 RHOP08100 348 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 PRR29P0C7W0 189 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 ODC1P11926 461 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 POLR2BP30876 1174 aaKnown RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 CCR2P41597 374 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 TAF6P49848 677 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 TFAMQ00059 246 aaKnown RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 STK4Q13043 487 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 GPR17Q13304 367 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 MYBPC2Q14324 1141 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 PABPC1LQ4VXU2 614 aaKnown RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 LMBRD2Q68DH5 695 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 NPAS3Q8IXF0 933 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 NELFCDQ8IXH7 590 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 C12orf56Q8IXR9 622 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 FBXL6Q8N531 539 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 TTC9BQ8N6N2 239 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 ST13P5Q8NFI4 369 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 OR5B17Q8NGF7 314 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 PBXIP1Q96AQ6 731 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 RPP25Q9BUL9 199 aaKnown RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 OXCT2Q9BYC2 517 aaPredicted RBP16.38■□□□□ 0.21
CLIP3-202ENST00000585466 MTMR12Q9C0I1 747 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 USP25Q9UHP3 1055 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 POLIQ9UNA4 740 aa16.38■□□□□ 0.21
CLIP3-202ENST00000585466 MTMR11A4FU01 709 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 CYB561D2O14569 222 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 PRRG1O14668 218 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 MOSPD3O75425 235 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 ITGB3P05106 788 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 CPB1P15086 417 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 EPHA5P54756 1037 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 VCPP55072 806 aaKnown RBP16.37■□□□□ 0.21
CLIP3-202ENST00000585466 KMT5BQ4FZB7 885 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 WSCD1Q658N2 575 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 CEP57L1Q8IYX8 460 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 SLC44A3Q8N4M1 653 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 FGF14Q92915 247 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 PGLYRP2Q96PD5 576 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 LRRC3Q9BY71 257 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 SCAND2PQ9GZW5 306 aaPredicted RBP16.37■□□□□ 0.21
CLIP3-202ENST00000585466 ZCWPW1Q9H0M4 648 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 DNAJC25Q9H1X3 360 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 INTS13Q9NVM9 706 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 YIPF1Q9Y548 306 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 ZFP37Q9Y6Q3 630 aaPredicted RBP16.37■□□□□ 0.21
CLIP3-202ENST00000585466 NUMBLQ9Y6R0 609 aa16.37■□□□□ 0.21
CLIP3-202ENST00000585466 KPNA7A9QM74 516 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 CLIC2O15247 247 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 CEBPBP17676 345 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 ELF1P32519 619 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 PLA2G5P39877 138 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 SNRPFP62306 86 aaKnown RBP16.36■□□□□ 0.21
CLIP3-202ENST00000585466 CENPPQ6IPU0 288 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 PARM1Q6UWI2 310 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 LIMS2Q7Z4I7 341 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 USP37Q86T82 979 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 LRRTM3Q86VH5 581 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 LRRC52Q8N7C0 313 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 ATAD1Q8NBU5 361 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 PLEKHO2Q8TD55 490 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 TCEAL4Q96EI5 215 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 MFSD14AQ96MC6 490 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 KCTD10Q9H3F6 313 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 ITGA11Q9UKX5 1188 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 AGAP1Q9UPQ3 857 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 HCN4Q9Y3Q4 1203 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 ATP6V1DQ9Y5K8 247 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 COL4A3Q01955 1670 aa16.36■□□□□ 0.21
CLIP3-202ENST00000585466 ZNF233A6NK53 670 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 LRG1P02750 347 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 NPR3P17342 541 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 SYKP43405 635 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 CYP24A1Q07973 514 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 TWF1Q12792 350 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 DPYDQ12882 1025 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 DUSP4Q13115 394 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 BECN1Q14457 450 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 SNRNP35Q16560 246 aaKnown RBP16.35■□□□□ 0.21
CLIP3-202ENST00000585466 KNOP1Q1ED39 458 aaKnown RBP16.35■□□□□ 0.21
CLIP3-202ENST00000585466 SV2CQ496J9 727 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 IER5LQ5T953 404 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 CWF19L1Q69YN2 538 aaKnown RBP16.35■□□□□ 0.21
CLIP3-202ENST00000585466 TMC8Q8IU68 726 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 HS6ST3Q8IZP7 471 aa16.35■□□□□ 0.21
CLIP3-202ENST00000585466 FSIP1Q8NA03 581 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms