RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	CCDC96	Q2M329	555 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	FAM26F	Q5R3K3	315 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	CCDC30	Q5VVM6	783 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	ARMC3	Q5W041	872 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	SULT6B1	Q6IMI4	303 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	UNC13D	Q70J99	1090 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	RNF44	Q7L0R7	432 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	BEND5	Q7L4P6	421 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	CPO	Q8IVL8	374 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	FTSJ3	Q8IY81	847 aa	Known RBP	5.64	□□□□□ -1.51
SS18-223	ENST00000583595	GLIS1	Q8NBF1	620 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	STT3B	Q8TCJ2	826 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	SNRNP27	Q8WVK2	155 aa	Known RBP	5.64	□□□□□ -1.51
SS18-223	ENST00000583595	RUBCN	Q92622	972 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	TNPO1	Q92973	898 aa	Known RBP	5.64	□□□□□ -1.51
SS18-223	ENST00000583595	LRRC46	Q96FV0	321 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	BDH2	Q9BUT1	245 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	BTBD2	Q9BX70	525 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	TRIM54	Q9BYV2	358 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	OR10A5	Q9H207	317 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	MANSC1	Q9H8J5	431 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	WASH6P	Q9NQA3	447 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	TBC1D22B	Q9NU19	505 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595	DUSP10	Q9Y6W6	482 aa		5.64	□□□□□ -1.51
SS18-223	ENST00000583595		K7ENM7	598 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	PODXL	O00592	558 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	PRAMEF4	O60810	478 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	BAIAP3	O94812	1187 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	ENDOD1	O94919	500 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.63	□□□□□ -1.51	1e-9	■■■■■ 30.1
SS18-223	ENST00000583595	KRT9	P35527	623 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	RAB39A	Q14964	217 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	ARHGAP15	Q53QZ3	475 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	FBXO47	Q5MNV8	452 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	PDXDC1	Q6P996	788 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	FBXO38	Q6PIJ6	1188 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	TMC5	Q6UXY8	1006 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	C4orf50	Q6ZRC1	276 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	USP49	Q70CQ1	688 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	BMP8A	Q7Z5Y6	402 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	MICU3	Q86XE3	530 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	FAM90A1	Q86YD7	464 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	OR8H2	Q8N162	312 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	PQLC1	Q8N2U9	271 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	FBXO18	Q8NFZ0	1043 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	OR6B3	Q8NGW1	331 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	PPP1R14C	Q8TAE6	165 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	WDR48	Q8TAF3	677 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	BRIX1	Q8TDN6	353 aa	Known RBP	5.63	□□□□□ -1.51
SS18-223	ENST00000583595	IGDCC4	Q8TDY8	1250 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	SNX33	Q8WV41	574 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	ZBTB10	Q96DT7	871 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	SERINC2	Q96SA4	455 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	KRTAP9-8	Q9BYQ0	159 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	OSBPL6	Q9BZF3	934 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	DHX36	Q9H2U1	1008 aa	Known RBP	5.63	□□□□□ -1.51
SS18-223	ENST00000583595	WDCP	Q9H6R7	721 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	PLEKHA5	Q9HAU0	1116 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	SERHL	Q9NQF3	203 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	KIF17	Q9P2E2	1029 aa		5.63	□□□□□ -1.51
SS18-223	ENST00000583595	SRP68	Q9UHB9	627 aa	Known RBP	5.63	□□□□□ -1.51
SS18-223	ENST00000583595	TRIM43B	A6NCK2	446 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	TMEM233	B4DJY2	109 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595		B4E171	279 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	WNT10B	O00744	389 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	THAP12	O43422	761 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	IL18BP	O95998	194 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	LTA4H	P09960	611 aa	Known RBP	5.62	□□□□□ -1.51
SS18-223	ENST00000583595	XBP1	P17861	261 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	DDC	P20711	480 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	ECHS1	P30084	290 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	CNR2	P34972	360 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	SREBF1	P36956	1147 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	TSPAN7	P41732	249 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	LIFR	P42702	1097 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	GLRB	P48167	497 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	KCNJ5	P48544	419 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	NR1H2	P55055	460 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	SLC13A2	Q13183	592 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	CTBP1	Q13363	440 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	DGKD	Q16760	1214 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	LIN54	Q6MZP7	749 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	BORA	Q6PGQ7	559 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	CATSPERG	Q6ZRH7	1159 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	PRRT2	Q7Z6L0	340 aa	Predicted RBP	5.62	□□□□□ -1.51
SS18-223	ENST00000583595	LRRTM4	Q86VH4	590 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	PCYOX1L	Q8NBM8	494 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	FAM71B	Q8TC56	605 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	KBTBD7	Q8WVZ9	684 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	TRIM43	Q96BQ3	446 aa	Predicted RBP	5.62	□□□□□ -1.51
SS18-223	ENST00000583595	RRP36	Q96EU6	259 aa	Known RBP	5.62	□□□□□ -1.51
SS18-223	ENST00000583595	DYDC2	Q96IM9	177 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	STK31	Q9BXU1	1019 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	CHST8	Q9H2A9	424 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	MLXIP	Q9HAP2	919 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	SLAMF7	Q9NQ25	335 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	TM7SF3	Q9NS93	570 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595	HSPBP1	Q9NZL4	362 aa		5.62	□□□□□ -1.51
SS18-223	ENST00000583595		A0A0B4J269	797 aa		5.61	□□□□□ -1.51
SS18-223	ENST00000583595	ORC4	O43929	436 aa		5.61	□□□□□ -1.51

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