RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 BCO2Q9BYV7 579 aa22.18■■□□□ 1.14
SHMT1-209ENST00000582653 SEL1LQ9UBV2 794 aa22.18■■□□□ 1.14
SHMT1-209ENST00000582653 DERAQ9Y315 318 aa22.18■■□□□ 1.14
SHMT1-209ENST00000582653 OR6C75A6NL08 312 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 TULP1O00294 542 aaPredicted RBP22.17■■□□□ 1.14
SHMT1-209ENST00000582653 NRG2O14511 850 aaPredicted RBP22.17■■□□□ 1.14
SHMT1-209ENST00000582653 MOSPD3O75425 235 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 GCNT3O95395 438 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 VNN2O95498 520 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 GAP43P17677 238 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 TYMPP19971 482 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 FCARP24071 287 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 UBXN2BQ14CS0 331 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 ZSWIM2Q8NEG5 633 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 HVCN1Q96D96 273 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 SENP8Q96LD8 212 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 ZSWIM3Q96MP5 696 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 ASB16Q96NS5 453 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 GPR88Q9GZN0 384 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 ASB7Q9H672 318 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 LTB4R2Q9NPC1 389 aa22.17■■□□□ 1.14
SHMT1-209ENST00000582653 ANO9A1A5B4 782 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 PIRO00625 290 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 LMNAP02545 664 aaKnown RBP22.16■■□□□ 1.14
SHMT1-209ENST00000582653 CD72P21854 359 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 MAGEA9P43362 315 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 POU5F1Q01860 360 aaKnown RBP22.16■■□□□ 1.14
SHMT1-209ENST00000582653 DUSP4Q13115 394 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 MYBPC2Q14324 1141 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 L1TD1Q5T7N2 865 aaKnown RBP22.16■■□□□ 1.14
SHMT1-209ENST00000582653 OVOS1Q6IE37 1185 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 MAML2Q8IZL2 1156 aaPredicted RBP22.16■■□□□ 1.14
SHMT1-209ENST00000582653 DNASE1L2Q92874 299 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 SMARCD2Q92925 531 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 ACCSQ96QU6 501 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 TMEM209Q96SK2 561 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 TRMT61BQ9BVS5 477 aaKnown RBP22.16■■□□□ 1.14
SHMT1-209ENST00000582653 CRISPLD1Q9H336 500 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 ASAH2Q9NR71 780 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 PANK4Q9NVE7 773 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 R4GN57 208 aa22.16■■□□□ 1.14
SHMT1-209ENST00000582653 PTPRZ1P23471 2315 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-209ENST00000582653 SPTLC2O15270 562 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 NCAM2O15394 837 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 MYL4P12829 197 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 WNT7BP56706 349 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 PLD1Q13393 1074 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 FOXD4L6Q3SYB3 417 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-209ENST00000582653 CENPPQ6IPU0 288 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 ZC3H14Q6PJT7 736 aaKnown RBP22.15■■□□□ 1.14
SHMT1-209ENST00000582653 FOXD4L3Q6VB84 417 aaPredicted RBP22.15■■□□□ 1.14
SHMT1-209ENST00000582653 ZNF852Q6ZMS4 543 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 KCNG4Q8TDN1 519 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 CLDN23Q96B33 292 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 BORCS6Q96GS4 357 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 FAM213AQ9BRX8 229 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 LRRC3Q9BY71 257 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 TRPV4Q9HBA0 871 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 TRPV5Q9NQA5 729 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 HEBP1Q9NRV9 189 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 DPP3Q9NY33 737 aa22.15■■□□□ 1.14
SHMT1-209ENST00000582653 FRMD3A2A2Y4 597 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 ODC1P11926 461 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 GJA1P17302 382 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 ALDH1A3P47895 512 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 CDR1P51861 262 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 EPHB3P54753 998 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 POSTNQ15063 836 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 ZNF528Q3MIS6 628 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 ARMCX5Q6P1M9 558 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 TPRG1Q6ZUI0 275 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 EFCAB13Q8IY85 973 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 IRF7Q92985 503 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 SAAL1Q96ER3 474 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 ZNF396Q96N95 335 aaPredicted RBP22.14■■□□□ 1.13
SHMT1-209ENST00000582653 BRD9Q9H8M2 597 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 OLFML3Q9NRN5 406 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 HSFX1Q9UBD0 423 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 FBXO4Q9UKT5 387 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 EXOC7Q9UPT5 735 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 SLC27A5Q9Y2P5 690 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 MRPS17Q9Y2R5 130 aaKnown RBP22.14■■□□□ 1.13
SHMT1-209ENST00000582653 C2CD2Q9Y426 696 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 YIPF1Q9Y548 306 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 PCDHB13Q9Y5F0 798 aa22.14■■□□□ 1.13
SHMT1-209ENST00000582653 ANK1P16157 1881 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 SHISA7A6NL88 538 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 PPP6R2O75170 966 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 PRPF6O94906 941 aaKnown RBP22.13■■□□□ 1.13
SHMT1-209ENST00000582653 CYP11A1P05108 521 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 PSMC3P17980 439 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 FZD5Q13467 585 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 GRM2Q14416 872 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 MFSD6LQ8IWD5 586 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 SYCP3Q8IZU3 236 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 HPS3Q969F9 1004 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 ZNF334Q9HCZ1 680 aaPredicted RBP22.13■■□□□ 1.13
SHMT1-209ENST00000582653 SPATA6Q9NWH7 488 aaPredicted RBP22.13■■□□□ 1.13
SHMT1-209ENST00000582653 ASB3Q9Y575 518 aa22.13■■□□□ 1.13
SHMT1-209ENST00000582653 COL4A3Q01955 1670 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms