RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 CCDC172P0C7W6 258 aa17.27■□□□□ 0.36
SS18-211ENST00000578954 PNMA6AP0CW24 399 aaPredicted RBP17.27■□□□□ 0.36
SS18-211ENST00000578954 IGFBP6P24592 240 aaPredicted RBP17.27■□□□□ 0.36
SS18-211ENST00000578954 ASIC2Q16515 512 aa17.27■□□□□ 0.36
SS18-211ENST00000578954 SOWAHAQ2M3V2 549 aa17.27■□□□□ 0.36
SS18-211ENST00000578954 TSR1Q2NL82 804 aaKnown RBP17.27■□□□□ 0.36
SS18-211ENST00000578954 SCARA5Q6ZMJ2 495 aa17.27■□□□□ 0.36
SS18-211ENST00000578954 MTIF3Q9H2K0 278 aaKnown RBP17.27■□□□□ 0.36
SS18-211ENST00000578954 ZNHIT6Q9NWK9 470 aaKnown RBP17.27■□□□□ 0.36
SS18-211ENST00000578954 L1RE1Q9UN81 338 aa17.27■□□□□ 0.36
SS18-211ENST00000578954 SSU72P8A0A1W2PR75 194 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 CARNS1A5YM72 827 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 M0QZQ0 153 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 CILPO75339 1184 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 B3GAT3O94766 335 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 GFPT2O94808 682 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 CLSTN1O94985 981 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 KIF4AO95239 1232 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 SERPING1P05155 500 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 GALTP07902 379 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 WEE2P0C1S8 567 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 CLCN1P35523 988 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 SLC11A1P49279 550 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 MAPK8IP2Q13387 824 aaPredicted RBP17.26■□□□□ 0.35
SS18-211ENST00000578954 TIGD5Q53EQ6 642 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 TMTC1Q8IUR5 882 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 KBTBD7Q8WVZ9 684 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 SUSD3Q96L08 255 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 SENP8Q96LD8 212 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 BAG1Q99933 345 aaPredicted RBP17.26■□□□□ 0.35
SS18-211ENST00000578954 SYT11Q9BT88 431 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 MARCH5Q9NX47 278 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 ARHGAP20Q9P2F6 1191 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 HCSTQ9UBK5 93 aa17.26■□□□□ 0.35
SS18-211ENST00000578954 BARX2Q9UMQ3 279 aaPredicted RBP17.26■□□□□ 0.35
SS18-211ENST00000578954 BZW2Q9Y6E2 419 aaKnown RBP17.26■□□□□ 0.35
SS18-211ENST00000578954 NRP1O14786 923 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 HUS1O60921 280 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 CYP11A1P05108 521 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 WARSP23381 471 aaKnown RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 ANXA13P27216 316 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 MAGEA10P43363 369 aaPredicted RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 RAP1GAPP47736 663 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 PAN2Q504Q3 1202 aaKnown RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 CYP26C1Q6V0L0 522 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 TMCO2Q7Z6W1 182 aaPredicted RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 UNC93AQ86WB7 457 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 TMEM86AQ8N2M4 240 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 PDCL2Q8N4E4 241 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 RBBP8NLQ8NC74 664 aaPredicted RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 SP7Q8TDD2 431 aaPredicted RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 WHAMMQ8TF30 809 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 MMS19Q96T76 1030 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 MRPL45Q9BRJ2 306 aaKnown RBP17.25■□□□□ 0.35
SS18-211ENST00000578954 PCDHB4Q9Y5E5 795 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 SLC4A7Q9Y6M7 1214 aa17.25■□□□□ 0.35
SS18-211ENST00000578954 TSC2P49815 1807 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 ARHGEF37A1IGU5 675 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 CYB561D2O14569 222 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 GABRDO14764 452 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 CYP26A1O43174 497 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 NRDCO43847 1150 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 EFEMP2O95967 443 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 ALDH2P05091 517 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 ITGB1P05556 798 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 PAEPP09466 180 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 KRT5P13647 590 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 CD58P19256 250 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 TYMPP19971 482 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 OR1G1P47890 313 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 CDH8P55286 799 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 BPIFB4P59827 614 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 KLHL30Q0D2K2 578 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 TMEM270Q6UE05 265 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 HERC6Q8IVU3 1022 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 APPL2Q8NEU8 664 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 OLIG1Q8TAK6 271 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 EPS8L1Q8TE68 723 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 RABGGTAQ92696 567 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 CHP1Q99653 195 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 COLEC11Q9BWP8 271 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 NOCTQ9UK39 431 aaKnown RBP17.24■□□□□ 0.35
SS18-211ENST00000578954 FAN1Q9Y2M0 1017 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 NME7Q9Y5B8 376 aa17.24■□□□□ 0.35
SS18-211ENST00000578954 F8W810 466 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 ARHGAP6O43182 974 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 LINC00271P0C7V0 271 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 ODC1P11926 461 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 LAG3P18627 525 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 BRCC3P46736 316 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 RAD23BP54727 409 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 BCAR1P56945 870 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 BTG3Q14201 252 aaPredicted RBP17.23■□□□□ 0.35
SS18-211ENST00000578954 ASTE1Q2TB18 679 aaPredicted RBP17.23■□□□□ 0.35
SS18-211ENST00000578954 FAM117BQ6P1L5 589 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 DSTYKQ6XUX3 929 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 CCDC170Q8IYT3 715 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 ADGRF2Q8IZF7 708 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 TWNKQ96RR1 684 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 YME1L1Q96TA2 773 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms