RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 C12orf65Q9H3J6 166 aaKnown RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 APOBEC3GQ9HC16 384 aaKnown RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 ALG13Q9NP73 1137 aaKnown RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 IVNS1ABPQ9Y6Y0 642 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 LRRD1A4D1F6 860 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 LRRIQ4A6NIV6 560 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 H0Y3Z8 333 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 PSTPIP1O43586 416 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 UNC5CO95185 931 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 NOMO3P69849 1222 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 PDIA2Q13087 525 aaKnown RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 SPARCL1Q14515 664 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 TRIM68Q6AZZ1 485 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 TXNRD3NBQ6F5E7 133 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 RSBN1LQ6PCB5 846 aaPredicted RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 ZCCHC9Q8N567 271 aaKnown RBP18.08■□□□□ 0.48
VPS53-215ENST00000573028 LTBP4Q8N2S1 1624 aa18.08■□□□□ 0.48
VPS53-215ENST00000573028 F8VP50 259 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 SFNP31947 248 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 CUL2Q13617 745 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 ZNF570Q96NI8 536 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 MCEEQ96PE7 176 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 PXMP2Q9NR77 195 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 ZNF277Q9NRM2 450 aaPredicted RBP18.07■□□□□ 0.48
VPS53-215ENST00000573028 AGO2Q9UKV8 859 aaKnown RBP18.07■□□□□ 0.48
VPS53-215ENST00000573028 ZNFX1Q9P2E3 1918 aaKnown RBP18.07■□□□□ 0.48
VPS53-215ENST00000573028 CBX6O95503 412 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 CYP1A1P04798 512 aaPredicted RBP18.07■□□□□ 0.48
VPS53-215ENST00000573028 ATP2A2P16615 1042 aaKnown RBP18.07■□□□□ 0.48
VPS53-215ENST00000573028 KLRC2P26717 231 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 GTF2H1P32780 548 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 SEPT7Q16181 437 aaKnown RBP18.07■□□□□ 0.48
VPS53-215ENST00000573028 TAS1R3Q7RTX0 852 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 KATNAL2Q8IYT4 538 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 ABRAQ8N0Z2 381 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 EXD1Q8NHP7 514 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 MICAL1Q8TDZ2 1067 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 DCTN4Q9UJW0 460 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 GRID1Q9ULK0 1009 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 CHKBQ9Y259 395 aa18.07■□□□□ 0.48
VPS53-215ENST00000573028 TCEA3O75764 348 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 SLC1A5Q15758 541 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 RNF43Q68DV7 783 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 ASRGL1Q7L266 308 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 TEX2Q8IWB9 1127 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 FEZF2Q8TBJ5 459 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 TMEM174Q8WUU8 243 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 WNK4Q96J92 1243 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 SLC24A3Q9HC58 644 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 XPNPEP1Q9NQW7 623 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 RBAKQ9NYW8 714 aaPredicted RBP18.06■□□□□ 0.48
VPS53-215ENST00000573028 LIASO43766 372 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 ASMTLO95671 621 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 APBA3O96018 575 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 GAD2Q05329 585 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 ZACNQ401N2 412 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 TXLNGQ9NUQ3 528 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 RIPK3Q9Y572 518 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 DNALI1O14645 258 aaPredicted RBP18.06■□□□□ 0.48
VPS53-215ENST00000573028 PLA2G6O60733 806 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 VNN1O95497 513 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 GCAP28676 217 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 POLGP54098 1239 aaPredicted RBP18.06■□□□□ 0.48
VPS53-215ENST00000573028 EFTUD2Q15029 972 aaKnown RBP eCLIP18.06■□□□□ 0.48
VPS53-215ENST00000573028 SPDYE2Q495Y8 402 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 CNKSR1Q969H4 720 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 UTP4Q969X6 686 aaKnown RBP18.06■□□□□ 0.48
VPS53-215ENST00000573028 SENP7Q9BQF6 1050 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 KIAA1683Q9H0B3 1180 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 NUB1Q9Y5A7 615 aa18.06■□□□□ 0.48
VPS53-215ENST00000573028 EXTL3O43909 919 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 PRKCEQ02156 737 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 OVGP1Q12889 678 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 CRYMQ14894 314 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 SMTNL2Q2TAL5 461 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 SYCP2LQ5T4T6 812 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 ZNF677Q86XU0 584 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 CCDC60Q8IWA6 550 aaPredicted RBP18.05■□□□□ 0.48
VPS53-215ENST00000573028 OR5B17Q8NGF7 314 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 ATP6V0A1Q93050 837 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 TARS2Q9BW92 718 aaKnown RBP18.05■□□□□ 0.48
VPS53-215ENST00000573028 NPHS2Q9NP85 383 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 SPIRE2Q8WWL2 714 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 GRAMD1AQ96CP6 724 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 SLC38A10Q9HBR0 1119 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 PARVAQ9NVD7 372 aa18.05■□□□□ 0.48
VPS53-215ENST00000573028 NKX1-2Q9UD57 310 aaPredicted RBP18.05■□□□□ 0.48
VPS53-215ENST00000573028 COL11A2P13942 1736 aaPredicted RBP18.05■□□□□ 0.48
VPS53-215ENST00000573028 ZNF541Q9H0D2 1346 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 ZBED4O75132 1171 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 TJP3O95049 919 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 NR3C2P08235 984 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 ALADP13716 330 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 KRT4P19013 534 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 GARTP22102 1010 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 ALDH3A1P30838 453 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 SSTR1P30872 391 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 ANKRD20A2Q5SQ80 823 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 CYP4A22Q5TCH4 519 aa18.04■□□□□ 0.48
VPS53-215ENST00000573028 ANKRD20A1Q5TYW2 823 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms