RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 RNF20Q5VTR2 975 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 LPCAT2Q7L5N7 544 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 DHX32Q7L7V1 743 aaKnown RBP14.32□□□□□ -0.12
CCDC40-208ENST00000572270 SYT12Q8IV01 421 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 APPL2Q8NEU8 664 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 P2RY13Q9BPV8 354 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 GTPBP2Q9BX10 602 aaKnown RBP14.32□□□□□ -0.12
CCDC40-208ENST00000572270 C2orf40Q9H1Z8 148 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 FZD8Q9H461 694 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 EBF3Q9H4W6 596 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 SH3GLB2Q9NR46 395 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 SLC38A7Q9NVC3 462 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 NAV2Q8IVL1 2488 aa14.32□□□□□ -0.12
CCDC40-208ENST00000572270 KIAA1549LQ6ZVL6 1849 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 CFIP05156 583 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 GABRR2P28476 465 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 WEE1P30291 646 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 EXOSC10Q01780 885 aaKnown RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 LMBRD2Q68DH5 695 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 CDCA2Q69YH5 1023 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ANO7Q6IWH7 933 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 SLC23A3Q6PIS1 610 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 CCNI2Q6ZMN8 369 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ARMCX6Q7L4S7 300 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 APBB1IPQ7Z5R6 666 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ZNF605Q86T29 641 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 CCDC26Q8TAB7 109 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ADAMTS14Q8WXS8 1223 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 SLC39A7Q92504 469 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 SPACA7Q96KW9 195 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 GCNAQ96QF7 691 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 SLC26A6Q9BXS9 759 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 RNF26Q9BY78 433 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 DNAJC25Q9H1X3 360 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 TASP1Q9H6P5 420 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 HPS4Q9NQG7 708 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ANKEF1Q9NU02 776 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 DAXXQ9UER7 740 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 CIZ1Q9ULV3 898 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 PCDHA4Q9UN74 947 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ASB3Q9Y575 518 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 PCDHB9Q9Y5E1 797 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 TNRC6BQ9UPQ9 1833 aaKnown RBP14.31□□□□□ -0.12
CCDC40-208ENST00000572270 MYO16Q9Y6X6 1858 aa14.31□□□□□ -0.12
CCDC40-208ENST00000572270 ACACAQ13085 2346 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 TTLL13PA6NNM8 815 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 TNFRSF10BO14763 440 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 MAP3K13O43283 966 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 LIG1P18858 919 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 MARCKSP29966 332 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 MCM4P33991 863 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 GALK1P51570 392 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 YARSP54577 528 aaKnown RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 SOX4Q06945 474 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 TRIM68Q6AZZ1 485 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 GAREM2Q75VX8 874 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 ITIH5Q86UX2 942 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 CHFRQ96EP1 664 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 CNOT6LQ96LI5 555 aaKnown RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 PGLYRP2Q96PD5 576 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 FAM83CQ9BQN1 747 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 POLR3CQ9BUI4 534 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 KCNMB3Q9NPA1 279 aa14.3□□□□□ -0.12
CCDC40-208ENST00000572270 TOPORSQ9NS56 1045 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 MBD1Q9UIS9 605 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-208ENST00000572270 ADAMTS9Q9P2N4 1935 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 SHROOM3Q8TF72 1996 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 SMIM28A0A1B0GU29 152 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 USO1O60763 962 aaKnown RBP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 C1QL1O75973 258 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 U2AF2P26368 475 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 CYP4F8P98187 520 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 GFPT1Q06210 699 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 DUSP4Q13115 394 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 TRIP6Q15654 476 aaKnown RBP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 INF2Q27J81 1249 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 CC2D1AQ6P1N0 951 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 MAEAQ7L5Y9 396 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 TTC30AQ86WT1 665 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 BLIDQ8IZY5 108 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 BEST2Q8NFU1 509 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 DDX12PQ92771 950 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 PSMG2Q969U7 264 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 SUSD3Q96L08 255 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 FBRSL1Q9HCM7 1045 aaKnown RBP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 ANO2Q9NQ90 1003 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 RAI2Q9Y5P3 530 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 ATXN2Q99700 1313 aaKnown RBP14.29□□□□□ -0.12
CCDC40-208ENST00000572270 PLXNB3Q9ULL4 1909 aa14.29□□□□□ -0.12
CCDC40-208ENST00000572270 KALRNO60229 2985 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 OTOL1A6NHN0 477 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 ACKR2O00590 384 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 ALDH1A2O94788 518 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 FTH1P19P0C7X4 201 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 GCFC2P16383 781 aaKnown RBP14.28□□□□□ -0.12
CCDC40-208ENST00000572270 CDC25CP30307 473 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 HOXD12P35452 270 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 PI4KAP42356 2102 aa14.28□□□□□ -0.12
CCDC40-208ENST00000572270 RARRES1P49788 294 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms