RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 RBM23Q86U06 439 aaKnown RBP22.19■■□□□ 1.14
VPS53-210ENST00000571456 RNF168Q8IYW5 571 aaPredicted RBP22.19■■□□□ 1.14
VPS53-210ENST00000571456 POF1BQ8WVV4 589 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 SUSD6Q92537 303 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 IRAK3Q9Y616 596 aa22.19■■□□□ 1.14
VPS53-210ENST00000571456 NT5C1B-RDH14C9J2C7 533 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 KIF4AO95239 1232 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 PBX3P40426 434 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 STX17P56962 302 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 CREMQ03060 361 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 TYRO3Q06418 890 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 USP41Q3LFD5 358 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 C9orf57Q5W0N0 161 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 ENOX1Q8TC92 643 aaKnown RBP22.18■■□□□ 1.14
VPS53-210ENST00000571456 BORCS6Q96GS4 357 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 HERC2P3Q9BVR0 1158 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 THAP9Q9H5L6 903 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 GOLGA2P5Q9HBQ8 144 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 CEP250Q9BV73 2442 aa22.18■■□□□ 1.14
VPS53-210ENST00000571456 SYN3O14994 580 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 AARSP49588 968 aaKnown RBP eCLIP22.17■■□□□ 1.14
VPS53-210ENST00000571456 TAF6P49848 677 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 MYO1EQ12965 1108 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 SV2CQ496J9 727 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 CCDC40Q4G0X9 1142 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.17■■□□□ 1.14
VPS53-210ENST00000571456 TRAPPC11Q7Z392 1133 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 TMEM173Q86WV6 379 aaPredicted RBP22.17■■□□□ 1.14
VPS53-210ENST00000571456 TMEM105Q8N8V8 129 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 C1orf127Q8N9H9 656 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 PAAF1Q9BRP4 392 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 SRRTQ9BXP5 876 aaKnown RBP22.17■■□□□ 1.14
VPS53-210ENST00000571456 MTMR12Q9C0I1 747 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 ACACBO00763 2458 aa22.17■■□□□ 1.14
VPS53-210ENST00000571456 MED19A0JLT2 244 aaPredicted RBP22.16■■□□□ 1.14
VPS53-210ENST00000571456 LRRIQ3A6PVS8 624 aaPredicted RBP22.16■■□□□ 1.14
VPS53-210ENST00000571456 CTSAP10619 480 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 ATICP31939 592 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 WNT7BP56706 349 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 SMC1AQ14683 1233 aaKnown RBP22.16■■□□□ 1.14
VPS53-210ENST00000571456 VPS52Q8N1B4 723 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 SUSD3Q96L08 255 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 BPIFA3Q9BQP9 254 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 OXCT2Q9BYC2 517 aaPredicted RBP22.16■■□□□ 1.14
VPS53-210ENST00000571456 ZBP1Q9H171 429 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.16■■□□□ 1.14
VPS53-210ENST00000571456 SCN1AP35498 2009 aa22.16■■□□□ 1.14
VPS53-210ENST00000571456 FSCN2O14926 492 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 N4BP1O75113 896 aaKnown RBP22.15■■□□□ 1.14
VPS53-210ENST00000571456 STAU1O95793 577 aaKnown RBP22.15■■□□□ 1.14
VPS53-210ENST00000571456 ITGB3P05106 788 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 URODP06132 367 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 GLUD2P49448 558 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 LILRA4P59901 499 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 TRPC3Q13507 836 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 ZACNQ401N2 412 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 KIAA1841Q6NSI8 718 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 TMC7Q7Z402 723 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 APPL2Q8NEU8 664 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 OR5B17Q8NGF7 314 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 SPATA18Q8TC71 538 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 BCL7CQ8WUZ0 217 aaPredicted RBP22.15■■□□□ 1.14
VPS53-210ENST00000571456 GZF1Q9H116 711 aaPredicted RBP22.15■■□□□ 1.14
VPS53-210ENST00000571456 TLE6Q9H808 572 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 TMEM8AQ9HCN3 771 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 MRPL17Q9NRX2 175 aaKnown RBP22.15■■□□□ 1.14
VPS53-210ENST00000571456 CHST7Q9NS84 486 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 DSEQ9UL01 958 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 FRYLO94915 3013 aa22.15■■□□□ 1.14
VPS53-210ENST00000571456 M0QZQ0 153 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 PMM2O15305 246 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 PHACTR2O75167 634 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 C1RP00736 705 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 POLR2BP30876 1174 aaKnown RBP22.14■■□□□ 1.13
VPS53-210ENST00000571456 DSG1Q02413 1049 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 ZSCAN23Q3MJ62 389 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 KRT39Q6A163 491 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 C3orf58Q8NDZ4 430 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 PLEKHO2Q8TD55 490 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 TAF4BQ92750 862 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 TCF25Q9BQ70 676 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 TTPALQ9BTX7 342 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 ENTPD7Q9NQZ7 604 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 MAGEC2Q9UBF1 373 aaPredicted RBP22.14■■□□□ 1.13
VPS53-210ENST00000571456 AGAP1Q9UPQ3 857 aa22.14■■□□□ 1.13
VPS53-210ENST00000571456 PTPRJQ12913 1337 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 SYCE3A1L190 88 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 TULP1O00294 542 aaPredicted RBP22.13■■□□□ 1.13
VPS53-210ENST00000571456 P4HA2O15460 535 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 C4BPAP04003 597 aaKnown RBP22.13■■□□□ 1.13
VPS53-210ENST00000571456 KRT19P08727 400 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 FAM163BP0C2L3 166 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 TYMPP19971 482 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 FGFR3P22607 806 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 MYL5Q02045 173 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 CETN1Q12798 172 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 BIRC3Q13489 604 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 FAM171A1Q5VUB5 890 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 CD300LGQ6UXG3 332 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 C15orf39Q6ZRI6 1047 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms