RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ZHX3Q9H4I2 956 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 ASB7Q9H672 318 aa18.28■□□□□ 0.52
CLN3-231ENST00000568422 ZNF334Q9HCZ1 680 aaPredicted RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 EP300Q09472 2414 aaPredicted RBP18.28■□□□□ 0.52
CLN3-231ENST00000568422 TCHHQ07283 1943 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 FGF19O95750 216 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 CSTF1Q05048 431 aaKnown RBP18.27■□□□□ 0.52
CLN3-231ENST00000568422 DUSP4Q13115 394 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 GRM2Q14416 872 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 TMEM132DQ14C87 1099 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 C9orf57Q5W0N0 161 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 JADE1Q6IE81 842 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 CENPPQ6IPU0 288 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 VITQ6UXI7 678 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 MAMSTRQ6ZN01 415 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 MFSD6LQ8IWD5 586 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 KRI1Q8N9T8 703 aaKnown RBP18.27■□□□□ 0.52
CLN3-231ENST00000568422 ATRIPQ8WXE1 791 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 FAM212AQ96EL1 285 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 PGLYRP2Q96PD5 576 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 FIZ1Q96SL8 496 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 FAM126AQ9BYI3 521 aaPredicted RBP18.27■□□□□ 0.52
CLN3-231ENST00000568422 DSEQ9UL01 958 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 C2CD2Q9Y426 696 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 TSC2P49815 1807 aa18.27■□□□□ 0.52
CLN3-231ENST00000568422 DMXL1Q9Y485 3027 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 PIRO00625 290 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 ZNF263O14978 683 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 VNN2O95498 520 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 CYP11A1P05108 521 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 OR4Q2P0C623 313 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 PDCP20941 246 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 GDI1P31150 447 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 GUCY2FP51841 1108 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 FZD5Q13467 585 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 TEAD2Q15562 447 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 SLC39A4Q6P5W5 647 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 C1orf228Q6PIY5 440 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 SUMF1Q8NBK3 374 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 SHKBP1Q8TBC3 707 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 MSANTD3Q96H12 275 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 SENP8Q96LD8 212 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 HINFPQ9BQA5 517 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 LRRC3Q9BY71 257 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 SLITRK6Q9H5Y7 841 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 ZSCAN32Q9NX65 697 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 STYXL1Q9Y6J8 313 aa18.26■□□□□ 0.51
CLN3-231ENST00000568422 NUP210Q8TEM1 1887 aaPredicted RBP18.26■□□□□ 0.51
CLN3-231ENST00000568422 ANO9A1A5B4 782 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 SHISA7A6NL88 538 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 NMT1P30419 496 aaKnown RBP18.25■□□□□ 0.51
CLN3-231ENST00000568422 VIPR2P41587 438 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 GRIN1Q05586 938 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 ADALQ6DHV7 355 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 ITIH5Q86UX2 942 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 TMC8Q8IU68 726 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 ZNF687Q8N1G0 1237 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 TMEM130Q8N3G9 435 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 ZBTB44Q8NCP5 570 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 FAM3CQ92520 227 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 NELL1Q92832 810 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 HVCN1Q96D96 273 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 DNAJC25Q9H1X3 360 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 CRISPLD1Q9H336 500 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 PRMT8Q9NR22 394 aaPredicted RBP18.25■□□□□ 0.51
CLN3-231ENST00000568422 STK17AQ9UEE5 414 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 CCDC39Q9UFE4 941 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 AGO2Q9UKV8 859 aaKnown RBP18.25■□□□□ 0.51
CLN3-231ENST00000568422 SCN1AP35498 2009 aa18.25■□□□□ 0.51
CLN3-231ENST00000568422 OTOGLQ3ZCN5 2332 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 A0A1W2PRU2 124 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 MTMR11A4FU01 709 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 HEPACAM2A8MVW5 462 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 ANKRD63C9JTQ0 380 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 NRG2O14511 850 aaPredicted RBP18.24■□□□□ 0.51
CLN3-231ENST00000568422 NFICP08651 508 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 GJA1P17302 382 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 TUFMP49411 452 aaKnown RBP18.24■□□□□ 0.51
CLN3-231ENST00000568422 ACOT2P49753 483 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 SMARCB1Q12824 385 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 PPP2R5DQ14738 602 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 POSTNQ15063 836 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 ZC2HC1CQ53FD0 456 aaPredicted RBP18.24■□□□□ 0.51
CLN3-231ENST00000568422 ZNF720Q7Z2F6 126 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 DNAJB7Q7Z6W7 309 aaPredicted RBP18.24■□□□□ 0.51
CLN3-231ENST00000568422 YAF2Q8IY57 180 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 KIAA2013Q8IYS2 634 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 ATAD1Q8NBU5 361 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 PSMG2Q969U7 264 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 CHRDQ9H2X0 955 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 SEL1LQ9UBV2 794 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 NDRG2Q9UN36 371 aaKnown RBP18.24■□□□□ 0.51
CLN3-231ENST00000568422 SLC27A5Q9Y2P5 690 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 PIAS3Q9Y6X2 628 aa18.24■□□□□ 0.51
CLN3-231ENST00000568422 PPEF2O14830 753 aa18.23■□□□□ 0.51
CLN3-231ENST00000568422 TAF6P49848 677 aa18.23■□□□□ 0.51
CLN3-231ENST00000568422 NRLP54845 237 aa18.23■□□□□ 0.51
CLN3-231ENST00000568422 MTAPQ13126 283 aa18.23■□□□□ 0.51
CLN3-231ENST00000568422 CUL4AQ13619 759 aa18.23■□□□□ 0.51
CLN3-231ENST00000568422 METTL23Q86XA0 190 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms