RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IL10RAQ13651 578 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 PTPN21Q16825 1174 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 ZNF362Q5T0B9 420 aaPredicted RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 KIAA0895LQ68EN5 471 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 TAPT1Q6NXT6 567 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 ADGRG5Q8IZF4 528 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 CBARPQ8N350 705 aaPredicted RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 DCBLD1Q8N8Z6 715 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 FAM98AQ8NCA5 519 aaKnown RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 PDPRQ8NCN5 879 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 TFAP2BQ92481 460 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 MRGPRX4Q96LA9 322 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 HAPLN3Q96S86 360 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 CNPPD1Q9BV87 410 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 ALG8Q9BVK2 526 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 FAM126AQ9BYI3 521 aaPredicted RBP3.79□□□□□ -1.8
VPS35-207ENST00000568191 TPSD1Q9BZJ3 242 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 KLC4Q9NSK0 619 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 ASB6Q9NWX5 421 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 LIMCH1Q9UPQ0 1083 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 TNFRSF18Q9Y5U5 241 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 WNT6Q9Y6F9 365 aa3.79□□□□□ -1.8
VPS35-207ENST00000568191 SUN1O94901 812 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 GJB1P08034 283 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 CHRM2P08172 466 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 ITGALP20701 1170 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 MALP21145 153 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 GATA3P23771 443 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 SLC6A4P31645 630 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 MTMR1Q13613 665 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 C3orf36Q3SXR2 165 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 KHDC1Q4VXA5 237 aaKnown RBP3.78□□□□□ -1.8
VPS35-207ENST00000568191 CCDC93Q567U6 631 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 TSTD2Q5T7W7 516 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 TEDDM1Q5T9Z0 273 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 SLC4A10Q6U841 1118 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 PEG10Q86TG7 708 aaKnown RBP3.78□□□□□ -1.8
VPS35-207ENST00000568191 NSUN6Q8TEA1 469 aaKnown RBP3.78□□□□□ -1.8
VPS35-207ENST00000568191 NTN5Q8WTR8 489 aaPredicted RBP3.78□□□□□ -1.8
VPS35-207ENST00000568191 KAT5Q92993 513 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 SLC13A1Q9BZW2 595 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 WDCPQ9H6R7 721 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 CTTNBP2NLQ9P2B4 639 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 ARPP21Q9UBL0 812 aaPredicted RBP3.78□□□□□ -1.8
VPS35-207ENST00000568191 PCDHB1Q9Y5F3 818 aa3.78□□□□□ -1.8
VPS35-207ENST00000568191 SBNO2Q9Y2G9 1366 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 GABRDO14764 452 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 URI1O94763 535 aaPredicted RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 ZFPL1O95159 310 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 SBK3P0C264 359 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 VCAM1P19320 739 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 IL12RB1P42701 662 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 RECQLP46063 649 aaPredicted RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 MAPK10P53779 464 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 ATXN1P54253 815 aaKnown RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 PSMC1P62191 440 aaKnown RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 SATB1Q01826 763 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 SRSF4Q08170 494 aaKnown RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 FAM50AQ14320 339 aaKnown RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 PCBP2Q15366 365 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS35-207ENST00000568191 CCDC157Q569K6 752 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 COLEC12Q5KU26 742 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 SUMO4Q6EEV6 95 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 NSUN7Q8NE18 718 aaKnown RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 TMIEQ8NEW7 156 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 LPIN2Q92539 896 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 SARAFQ96BY9 339 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 FAM167AQ96KS9 214 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 OSBPL9Q96SU4 736 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 NELL2Q99435 816 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 VRK1Q99986 396 aaPredicted RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 PRDM13Q9H4Q3 707 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 SLAMF7Q9NQ25 335 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 IL17RBQ9NRM6 502 aa3.77□□□□□ -1.81
VPS35-207ENST00000568191 FEZ2Q9UHY8 353 aaPredicted RBP3.77□□□□□ -1.81
VPS35-207ENST00000568191 LRRC3CA6NJW4 275 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 ZNF785A8K8V0 405 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 F2RL2O00254 374 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 MGST3O14880 152 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PCDHGA12O60330 932 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 KATNA1O75449 491 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 NXPH3O95157 252 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 MATN4O95460 622 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 RARBP10826 455 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PPP3CBP16298 524 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 NDUFB7P17568 137 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 IBSPP21815 317 aaPredicted RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 EDNRBP24530 442 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 PIK3CGP48736 1102 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 ALDH9A1P49189 494 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 NDUFV1P49821 464 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 SNAPC2Q13487 334 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 BMPR2Q13873 1038 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 HABP2Q14520 560 aaPredicted RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 FLYWCH1Q4VC44 716 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 SFRP4Q6FHJ7 346 aaPredicted RBP3.76□□□□□ -1.81
VPS35-207ENST00000568191 LAYNQ6UX15 382 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 SLC30A10Q6XR72 485 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 TSHZ1Q6ZSZ6 1077 aa3.76□□□□□ -1.81
VPS35-207ENST00000568191 FAM9AQ8IZU1 332 aaPredicted RBP3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms