RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CBWD1Q9BRT8 395 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 FAM213AQ9BRX8 229 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 OXCT2Q9BYC2 517 aaPredicted RBP11.72□□□□□ -0.53
VPS39-208ENST00000564994 DNAJC25Q9H1X3 360 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 TNMDQ9H2S6 317 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 KBTBD4Q9NVX7 518 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 DPP3Q9NY33 737 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 GDE1Q9NZC3 331 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 MAFFQ9ULX9 164 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 EXOC7Q9UPT5 735 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 YIPF1Q9Y548 306 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 PCDHB13Q9Y5F0 798 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 F5P12259 2224 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 COL4A2P08572 1712 aa11.72□□□□□ -0.53
VPS39-208ENST00000564994 FAM186AA6NE01 2351 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 DENND4CQ5VZ89 1909 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 TICRRQ7Z2Z1 1910 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 MTMR11A4FU01 709 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 GOLGA8IPA6NC78 632 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 OR6C75A6NL08 312 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 GOLGA8JA6NMD2 632 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 STK25O00506 426 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 CUTAO60888 179 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 F13A1P00488 732 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 CYP11A1P05108 521 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 ODC1P11926 461 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 GJA1P17302 382 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 GARTP22102 1010 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 FCARP24071 287 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 EPHA5P54756 1037 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 SNW1Q13573 536 aaKnown RBP11.71□□□□□ -0.53
VPS39-208ENST00000564994 MYBPC2Q14324 1141 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 TANGO2Q6ICL3 276 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 CENPPQ6IPU0 288 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 PHLDB3Q6NSJ2 640 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 PDZD4Q76G19 769 aaPredicted RBP11.71□□□□□ -0.53
VPS39-208ENST00000564994 BRSK2Q8IWQ3 736 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 TTC9BQ8N6N2 239 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 DTWD2Q8NBA8 298 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 ATAD1Q8NBU5 361 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 DHX58Q96C10 678 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 FAM84AQ96KN4 292 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 ZNF512Q96ME7 567 aaPredicted RBP11.71□□□□□ -0.53
VPS39-208ENST00000564994 ZSWIM3Q96MP5 696 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 LRRC3Q9BY71 257 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 FOXQ1Q9C009 403 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 TRIM9Q9C026 710 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 IRF2BPLQ9H1B7 796 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 PCIF1Q9H4Z3 704 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 DLGAP2Q9P1A6 1054 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 SLC27A5Q9Y2P5 690 aa11.71□□□□□ -0.53
VPS39-208ENST00000564994 NUP210Q8TEM1 1887 aaPredicted RBP11.7□□□□□ -0.54
VPS39-208ENST00000564994 PTPRZ1P23471 2315 aaPredicted RBP11.7□□□□□ -0.54
VPS39-208ENST00000564994 PATJQ8NI35 1801 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 NCANO14594 1321 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 CYB561D2O14569 222 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 ZNF197O14709 1029 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 LRRN2O75325 713 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 ECI2O75521 394 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 SOAT2O75908 522 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 MICAL2O94851 1124 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 IL18RAPO95256 599 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 DCNP07585 359 aaKnown RBP11.7□□□□□ -0.54
VPS39-208ENST00000564994 PAX3P23760 479 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 HOXD13P35453 343 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 TAF6P49848 677 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 CDR1P51861 262 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 STARD6P59095 220 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 ALCAMQ13740 583 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 FAM78AQ5JUQ0 283 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 IQCEQ6IPM2 695 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 TMC8Q8IU68 726 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 CCDC65Q8IXS2 484 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 SYCP3Q8IZU3 236 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 ELMOD1Q8N336 334 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 C1orf127Q8N9H9 656 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 SPRYD3Q8NCJ5 442 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 CXorf38Q8TB03 319 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 SHKBP1Q8TBC3 707 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 ELSPBP1Q96BH3 223 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 PYM1Q9BRP8 204 aaKnown RBP11.7□□□□□ -0.54
VPS39-208ENST00000564994 ZCWPW1Q9H0M4 648 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 RBAKQ9NYW8 714 aaPredicted RBP11.7□□□□□ -0.54
VPS39-208ENST00000564994 FANCMQ8IYD8 2048 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 OBSL1O75147 1896 aa11.7□□□□□ -0.54
VPS39-208ENST00000564994 PROB1E7EW31 1015 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 EXTL3O43909 919 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 MYL4P12829 197 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 GLULP15104 373 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 RFX1P22670 979 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 CASP1P29466 404 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 POLR2BP30876 1174 aaKnown RBP11.69□□□□□ -0.54
VPS39-208ENST00000564994 TFAMQ00059 246 aaKnown RBP11.69□□□□□ -0.54
VPS39-208ENST00000564994 ANGPT1Q15389 498 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 TEAD2Q15562 447 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 MLF2Q15773 248 aaPredicted RBP11.69□□□□□ -0.54
VPS39-208ENST00000564994 SLC44A4Q53GD3 710 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 CYP4A22Q5TCH4 519 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 WSCD1Q658N2 575 aa11.69□□□□□ -0.54
VPS39-208ENST00000564994 ARMCX5Q6P1M9 558 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms