RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SCARA3Q6AZY7 606 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 NLGN1Q8N2Q7 840 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 LRRC8CQ8TDW0 803 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 FBXL18Q96ME1 805 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 RAB3IPQ96QF0 476 aaPredicted RBP13.97□□□□□ -0.17
CLN3-210ENST00000563874 LBHD1Q9BQE6 289 aaPredicted RBP13.97□□□□□ -0.17
CLN3-210ENST00000563874 STARD13Q9Y3M8 1113 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 PCDHB4Q9Y5E5 795 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 USH1CQ9Y6N9 552 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 PTPRJQ12913 1337 aa13.97□□□□□ -0.17
CLN3-210ENST00000563874 PSTPIP1O43586 416 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 CYP1A1P04798 512 aaPredicted RBP13.96□□□□□ -0.17
CLN3-210ENST00000563874 MYBL1P10243 752 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 RPS6P62753 249 aaKnown RBP13.96□□□□□ -0.17
CLN3-210ENST00000563874 GAD2Q05329 585 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 MOGSQ13724 837 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 BRDTQ58F21 947 aaPredicted RBP13.96□□□□□ -0.17
CLN3-210ENST00000563874 SLC27A3Q5K4L6 730 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 LIN9Q5TKA1 542 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 MFSD7Q6UXD7 560 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 KATNAL2Q8IYT4 538 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 DENND1AQ8TEH3 1009 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 FNBP1Q96RU3 617 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 ZNF341Q9BYN7 854 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 TBC1D22BQ9NU19 505 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 LIASO43766 372 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 T-ENOLP0DO92 83 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 GNA15P30679 374 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 PEX19P40855 299 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 SKIV2L2P42285 1042 aaKnown RBP13.96□□□□□ -0.17
CLN3-210ENST00000563874 CCDC15Q0P6D6 951 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 EFTUD2Q15029 972 aaKnown RBP eCLIP13.96□□□□□ -0.173e-6■■■■□ 22
CLN3-210ENST00000563874 TDRD10Q5VZ19 366 aaKnown RBP13.96□□□□□ -0.17
CLN3-210ENST00000563874 TXNRD3NBQ6F5E7 133 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 USP37Q86T82 979 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 LONP2Q86WA8 852 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 FAM13CQ8NE31 585 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 NPHS2Q9NP85 383 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 SAE1Q9UBE0 346 aaPredicted RBP13.96□□□□□ -0.17
CLN3-210ENST00000563874 SYNPO2Q9UMS6 1093 aa13.96□□□□□ -0.17
CLN3-210ENST00000563874 WDR64B1ANS9 1081 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 DNALI1O14645 258 aaPredicted RBP13.96□□□□□ -0.18
CLN3-210ENST00000563874 KRT1P04264 644 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 ABL2P42684 1182 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 PTGER2P43116 358 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 YARSP54577 528 aaKnown RBP13.96□□□□□ -0.18
CLN3-210ENST00000563874 FKBP1AP62942 108 aaKnown RBP13.96□□□□□ -0.18
CLN3-210ENST00000563874 NOMO3P69849 1222 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 EXD1Q8NHP7 514 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 TRIM11Q96F44 468 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 KLF6Q99612 283 aaPredicted RBP13.96□□□□□ -0.18
CLN3-210ENST00000563874 TMEM121Q9BTD3 319 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 TBC1D10AQ9BXI6 508 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 MAK16Q9BXY0 300 aaKnown RBP13.96□□□□□ -0.18
CLN3-210ENST00000563874 LRMDAQ9H2I8 198 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 ALG13Q9NP73 1137 aaKnown RBP13.96□□□□□ -0.18
CLN3-210ENST00000563874 GABBR1Q9UBS5 961 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 DCTN4Q9UJW0 460 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 IVNS1ABPQ9Y6Y0 642 aa13.96□□□□□ -0.18
CLN3-210ENST00000563874 THSD7AQ9UPZ6 1657 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 SPDYE2BA6NHP3 402 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 GOLGA8RI6L899 631 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 ZNF862O60290 1169 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 RAD17O75943 681 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 SPDYE6P0CI01 402 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 KRT4P19013 534 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 RAD23BP54727 409 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 NLRP11P59045 1033 aaKnown RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 OVGP1Q12889 678 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 PDIA2Q13087 525 aaKnown RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 PGM5Q15124 567 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 FAM182AQ5T1J6 154 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 HHATQ5VTY9 493 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 OGFOD1Q8N543 542 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 TTC8Q8TAM2 541 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 CNKSR1Q969H4 720 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 SLC7A6OSQ96CW6 309 aaPredicted RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 RMDN3Q96TC7 470 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 APOBEC3GQ9HC16 384 aaKnown RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 BATF3Q9NR55 127 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 ZNF70Q9UC06 446 aaPredicted RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 F8VP50 259 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 EDF1O60869 148 aaKnown RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 ENTPD5O75356 428 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 GTF2H1P32780 548 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 SEZ6Q53EL9 994 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 TAF1BQ53T94 588 aaPredicted RBP13.95□□□□□ -0.18
CLN3-210ENST00000563874 LVRNQ6Q4G3 990 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 ENOSF1Q7L5Y1 443 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 TAS1R3Q7RTX0 852 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 RELL1Q8IUW5 271 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 NUDCD1Q96RS6 583 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 UBN1Q9NPG3 1134 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLN3-210ENST00000563874 NUMBLQ9Y6R0 609 aa13.95□□□□□ -0.18
CLN3-210ENST00000563874 PEX11AO75192 247 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 ABHD2P08910 425 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 GCKP35557 465 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 CCNHP51946 323 aaPredicted RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 DYNLT1P63172 113 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms