RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 FAM212AQ96EL1 285 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 USP28Q96RU2 1077 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 CRISPLD1Q9H336 500 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 ZFP14Q9HCL3 533 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 ASAH2Q9NR71 780 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 DSEQ9UL01 958 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 ASB3Q9Y575 518 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 VPS13AQ96RL7 3174 aa18.65■□□□□ 0.58
VPS9D1-203ENST00000563798 OR4Q2P0C623 313 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 NASPP49321 788 aaPredicted RBP18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 L1TD1Q5T7N2 865 aaKnown RBP18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 TMC8Q8IU68 726 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 CLDN23Q96B33 292 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 BORCS6Q96GS4 357 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 ZSWIM3Q96MP5 696 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 DNAJC25Q9H1X3 360 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 LTB4R2Q9NPC1 389 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 EXOC7Q9UPT5 735 aa18.64■□□□□ 0.57
VPS9D1-203ENST00000563798 ANK1P16157 1881 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 DMDP11532 3685 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 MTMR11A4FU01 709 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 SHISA7A6NL88 538 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 K7ELQ4 463 aaPredicted RBP18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 IL18RAPO95256 599 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 EPHB3P54753 998 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 DUSP4Q13115 394 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 ALCAMQ13740 583 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 MAML2Q8IZL2 1156 aaPredicted RBP18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 POMGNT1Q8WZA1 660 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 PGLYRP2Q96PD5 576 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 ACCSQ96QU6 501 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 TRMT61BQ9BVS5 477 aaKnown RBP18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 BCO2Q9BYV7 579 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 IKZF4Q9H2S9 585 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 MRPL44Q9H9J2 332 aaKnown RBP18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 DPP3Q9NY33 737 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 MTF2Q9Y483 593 aaPredicted RBP18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 PCDHB13Q9Y5F0 798 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 CFAP54Q96N23 3096 aa18.63■□□□□ 0.57
VPS9D1-203ENST00000563798 RIF1Q5UIP0 2472 aaKnown RBP18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 FAM170BA6NMN3 283 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 STX6O43752 255 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 LRRN2O75325 713 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 SP9P0CG40 484 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 MYL4P12829 197 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 PSMC3P17980 439 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 RPS9P46781 194 aaKnown RBP18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 ALDH1A3P47895 512 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 TAF6P49848 677 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 CEBPZQ03701 1054 aaKnown RBP18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 KCNA1Q09470 495 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 ZNF528Q3MIS6 628 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 ARMCX5Q6P1M9 558 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 EFCAB13Q8IY85 973 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 ZNF687Q8N1G0 1237 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 ATAD1Q8NBU5 361 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 OR10T2Q8NGX3 314 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 SHKBP1Q8TBC3 707 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 DEPDC1BQ8WUY9 529 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 E2F7Q96AV8 911 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 ZCWPW1Q9H0M4 648 aa18.62■□□□□ 0.57
VPS9D1-203ENST00000563798 TSC2P49815 1807 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 COL4A3Q01955 1670 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 A0A087X0B3 334 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 LDHAP00338 332 aaKnown RBP18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 GARTP22102 1010 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 MLLT6P55198 1093 aaPredicted RBP18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 SMARCB1Q12824 385 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 FZD5Q13467 585 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 VITQ6UXI7 678 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 ZNF852Q6ZMS4 543 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 TPRG1Q6ZUI0 275 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 LINC00301Q8NCQ3 95 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 ZSCAN18Q8TBC5 510 aaPredicted RBP18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 C2orf15Q8WU43 125 aaKnown RBP18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 IRF7Q92985 503 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 PSMG2Q969U7 264 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 TMEM209Q96SK2 561 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 BRD9Q9H8M2 597 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 FBXO4Q9UKT5 387 aa18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 MRPS17Q9Y2R5 130 aaKnown RBP18.61■□□□□ 0.57
VPS9D1-203ENST00000563798 FAM186AA6NE01 2351 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 PTPRZ1P23471 2315 aaPredicted RBP18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 MAN2B1O00754 1011 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 CYB561D2O14569 222 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 NCAM2O15394 837 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 FGF19O95750 216 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 GJA1P17302 382 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 TARSP26639 723 aaKnown RBP18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 STAT6P42226 847 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 TUFMP49411 452 aaKnown RBP18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 CASP5P51878 434 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 UBXN2BQ14CS0 331 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 TEAD2Q15562 447 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 MAMSTRQ6ZN01 415 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 DNAJB7Q7Z6W7 309 aaPredicted RBP18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 MFSD6LQ8IWD5 586 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 BRSK2Q8IWQ3 736 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 ZNF334Q9HCZ1 680 aaPredicted RBP18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 HEBP1Q9NRV9 189 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms