RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KAT5Q92993 513 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 PKNOX2Q96KN3 472 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 PPP1R13BQ96KQ4 1090 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ZNF558Q96NG5 402 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 PANX2Q96RD6 677 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SYT15Q9BQS2 421 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 HAUS2Q9NVX0 235 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 LMCD1Q9NZU5 365 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SLC45A1Q9Y2W3 748 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SH3BP1Q9Y3L3 701 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 MOXD2PA6NHM9 499 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 NCK2O43639 380 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SGPL1O95470 568 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ICAM3P32942 547 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 RTP1P59025 263 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SMTNL2Q2TAL5 461 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ZC3H18Q86VM9 953 aaKnown RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 CD302Q8IX05 232 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 RHOT2Q8IXI1 618 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 OR5B17Q8NGF7 314 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 EDEM1Q92611 657 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 MRPS31Q92665 395 aaKnown RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 ACSF2Q96CM8 615 aaPredicted RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 DDX27Q96GQ7 796 aaKnown RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 BPIFA3Q9BQP9 254 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 ASB7Q9H672 318 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 C11orf49Q9H6J7 331 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 WRAP73Q9P2S5 460 aaPredicted RBP9.78□□□□□ -0.84
VPS39-205ENST00000562258 TELO2Q9Y4R8 837 aa9.78□□□□□ -0.84
VPS39-205ENST00000562258 SMIM35A0A1B0GVV1 85 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 RIOK3O14730 519 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 ZBED1O96006 694 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 BDNFP23560 247 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SF3A3Q12874 501 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS39-205ENST00000562258 GDF6Q6KF10 455 aaPredicted RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 BRSK2Q8IWQ3 736 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 ARNTL2Q8WYA1 636 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 C18orf25Q96B23 403 aaPredicted RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 RRAGDQ9NQL2 400 aaPredicted RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 KRT82Q9NSB4 513 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 DDIT4Q9NX09 232 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 CACNG4Q9UBN1 327 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 C4AP0C0L4 1744 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 NDC80O14777 642 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 GNRH1P01148 92 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 FGGP02679 453 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 EZRP15311 586 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 KCNA4P22459 653 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SULT1E1P49888 294 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SEPT6Q14141 434 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 GEN1Q17RS7 908 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SLC39A12Q504Y0 691 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 EFHC2Q5JST6 749 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SYCP2LQ5T4T6 812 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 PALM2Q8IXS6 379 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 MAIP1Q8WWC4 291 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 ACO2Q99798 780 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 EIF2AQ9BY44 585 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 XPNPEP1Q9NQW7 623 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 CAPN11Q9UMQ6 739 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SLC27A5Q9Y2P5 690 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 A0A1W2PQC6 194 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 ENDOD1O94919 500 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 TUBB4AP04350 444 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 AVPR1AP37288 418 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 RWDD2BP57060 319 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 PPP3CAQ08209 521 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 ELAVL2Q12926 359 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 NFE2Q16621 373 aaPredicted RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 C10orf76Q5T2E6 689 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SDHAF4Q5VUM1 108 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SARM1Q6SZW1 724 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 WDR49Q8IV35 697 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 EMC1Q8N766 993 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 SELENOSQ9BQE4 189 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 MRPL9Q9BYD2 267 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 LSM7Q9UK45 103 aaKnown RBP9.77□□□□□ -0.85
VPS39-205ENST00000562258 TNFSF13BQ9Y275 285 aa9.77□□□□□ -0.85
VPS39-205ENST00000562258 ARVCFO00192 962 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 AXLP30530 894 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 DEUP1Q05D60 604 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 EFEMP1Q12805 493 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 NR1I3Q14994 352 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 TDRD10Q5VZ19 366 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 FBXO46Q6PJ61 603 aaPredicted RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 SLC24A5Q71RS6 500 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 CHSY1Q86X52 802 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 GPR152Q8TDT2 470 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 SLC35C1Q96A29 364 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 LENG9Q96B70 501 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 KLHL8Q9P2G9 620 aaPredicted RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 TTC7AQ9ULT0 858 aaPredicted RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 HPCAL4Q9UM19 191 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 IPPQ9Y573 584 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 MAFBQ9Y5Q3 323 aaPredicted RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 CNTNAP2Q9UHC6 1331 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 SART1O43290 800 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 ADRB2P07550 413 aa9.76□□□□□ -0.85
VPS39-205ENST00000562258 SNRPFP62306 86 aaKnown RBP9.76□□□□□ -0.85
VPS39-205ENST00000562258 GUCY2DQ02846 1103 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms