RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SHKBP1Q8TBC3 707 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 RAD54LQ92698 747 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 MSTO1Q9BUK6 570 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 OSBPL6Q9BZF3 934 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 DNAJC25Q9H1X3 360 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 IKZF4Q9H2S9 585 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 SEMA4AQ9H3S1 761 aa12.64□□□□□ -0.39
USP3-220ENST00000561381 CPSF3Q9UKF6 684 aaKnown RBP12.64□□□□□ -0.39
USP3-220ENST00000561381 DCHS1Q96JQ0 3298 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 GPR179Q6PRD1 2367 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 PATJQ8NI35 1801 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 LAMTOR5O43504 91 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 SLC26A4O43511 780 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 SOAT2O75908 522 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 KRT18P05783 430 aaKnown RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 CENPBP07199 599 aaPredicted RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 LONP1P36776 959 aaKnown RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 MCM2P49736 904 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ACOT2P49753 483 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 EPHA5P54756 1037 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 LILRA4P59901 499 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 CSTF1Q05048 431 aaKnown RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 KYAT1Q16773 422 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ZC3H14Q6PJT7 736 aaKnown RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 ZNF852Q6ZMS4 543 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 USP37Q86T82 979 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 TMC8Q8IU68 726 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 GPIHBP1Q8IV16 184 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 DCLK2Q8N568 766 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ATAD1Q8NBU5 361 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 RASSF8Q8NHQ8 419 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ZSCAN18Q8TBC5 510 aaPredicted RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 SMARCD2Q92925 531 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 CLDN23Q96B33 292 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 EPSTI1Q96J88 318 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 TRMT61BQ9BVS5 477 aaKnown RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 LRRC3Q9BY71 257 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 BRD9Q9H8M2 597 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ASAH2Q9NR71 780 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 MAFFQ9ULX9 164 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 SLC27A5Q9Y2P5 690 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.63□□□□□ -0.39
USP3-220ENST00000561381 CLIC4Q9Y696 253 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 ANK1P16157 1881 aa12.63□□□□□ -0.39
USP3-220ENST00000561381 SCN1AP35498 2009 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 OTOGLQ3ZCN5 2332 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 A0A1W2PRU2 124 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 MTMR11A4FU01 709 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 OR6C75A6NL08 312 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 TBCAO75347 108 aaKnown RBP12.62□□□□□ -0.39
USP3-220ENST00000561381 BMP15O95972 392 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 GDI1P31150 447 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 ID4P47928 161 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 GTF2BQ00403 316 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 GPR17Q13304 367 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 STXBP5Q5T5C0 1151 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 C9orf57Q5W0N0 161 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 OVOS1Q6IE37 1185 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 CENPPQ6IPU0 288 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 TSSK4Q6SA08 328 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 BRAPQ7Z569 592 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 MAP4K3Q8IVH8 894 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 KIAA2013Q8IYS2 634 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 ZNF687Q8N1G0 1237 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 SUMF1Q8NBK3 374 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 OR10T2Q8NGX3 314 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 LARP4BQ92615 738 aaKnown RBP12.62□□□□□ -0.39
USP3-220ENST00000561381 DNASE1L2Q92874 299 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 RSPRY1Q96DX4 576 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 SENP8Q96LD8 212 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 CCSER1Q9C0I3 900 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 SLITRK6Q9H5Y7 841 aa12.62□□□□□ -0.39
USP3-220ENST00000561381 UPF2Q9HAU5 1272 aaKnown RBP12.62□□□□□ -0.39
USP3-220ENST00000561381 ZNF334Q9HCZ1 680 aaPredicted RBP12.62□□□□□ -0.39
USP3-220ENST00000561381 NDRG2Q9UN36 371 aaKnown RBP12.62□□□□□ -0.39
USP3-220ENST00000561381 TICRRQ7Z2Z1 1910 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 VPS37CA5D8V6 355 aaPredicted RBP12.61□□□□□ -0.39
USP3-220ENST00000561381 C2orf72A6NCS6 295 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 HEPACAM2A8MVW5 462 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 PIRO00625 290 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 XPOTO43592 962 aaKnown RBP12.61□□□□□ -0.39
USP3-220ENST00000561381 PSMC3P17980 439 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 TYMPP19971 482 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 DDIT3P35638 169 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 MTAPQ13126 283 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 TMEM132DQ14C87 1099 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 PTPAQ15257 358 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 FAM173BQ6P4H8 233 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 DYMQ7RTS9 669 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 SFR1Q86XK3 245 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 LEMD2Q8NC56 503 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 NELL2Q99435 816 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 HINFPQ9BQA5 517 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 OXCT2Q9BYC2 517 aaPredicted RBP12.61□□□□□ -0.39
USP3-220ENST00000561381 TRPV4Q9HBA0 871 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 FBXO4Q9UKT5 387 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 COL4A2P08572 1712 aa12.61□□□□□ -0.39
USP3-220ENST00000561381 ANO9A1A5B4 782 aa12.6□□□□□ -0.39
USP3-220ENST00000561381 ARNTLO00327 626 aa12.6□□□□□ -0.39
USP3-220ENST00000561381 KINO60870 393 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms