RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PCYOX1Q9UHG3 505 aa11.29□□□□□ -0.6
CUX1-217ENST00000558836 RASAL2Q9UJF2 1139 aa11.29□□□□□ -0.6
CUX1-217ENST00000558836 GRIN2DO15399 1336 aa11.29□□□□□ -0.6
CUX1-217ENST00000558836 FAM187AA6NFU0 413 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 BTBD19C9JJ37 291 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 GOLGA8SH3BPF8 625 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 PIK3R2O00459 728 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 PROSCO94903 275 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 ITGBL1O95965 494 aaPredicted RBP11.28□□□□□ -0.6
CUX1-217ENST00000558836 SLCO1A2P46721 670 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 CDR1P51861 262 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 SEC24CP53992 1094 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 SGSM1Q2NKQ1 1148 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 KCNV1Q6PIU1 500 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 MORC4Q8TE76 937 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 FAM81BQ96LP2 452 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 NIF3L1Q9GZT8 377 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 XYLT2Q9H1B5 865 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 EPB41L4BQ9H329 900 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 AVENQ9NQS1 362 aaPredicted RBP11.28□□□□□ -0.6
CUX1-217ENST00000558836 HMGXB4Q9UGU5 601 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 CCL15-CCL14A0A0B4J2E2 113 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 LACTBL1A8MY62 500 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 ITGB3P05106 788 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 ASPAP45381 313 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 CCT5P48643 541 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 PMS2P54278 862 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 OGDHQ02218 1023 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 KRT17Q04695 432 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 CCL15Q16663 113 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 CD302Q8IX05 232 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 HAUS1Q96CS2 278 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 RPF1Q9H9Y2 349 aaKnown RBP11.28□□□□□ -0.6
CUX1-217ENST00000558836 ASIC3Q9UHC3 531 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 FSCN2O14926 492 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 SHOX2O60902 331 aaPredicted RBP11.28□□□□□ -0.6
CUX1-217ENST00000558836 ECEL1O95672 775 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 STAG3L1P0CL83 205 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 ATF7P17544 494 aaPredicted RBP11.28□□□□□ -0.6
CUX1-217ENST00000558836 PROZP22891 400 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 MMP8P22894 467 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 ENPEPQ07075 957 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 PRAMEF19Q5SWL8 479 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 LDLRAD1Q5T700 205 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 JADE1Q6IE81 842 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 DCUN1D2Q6PH85 259 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 MAMDC4Q6UXC1 1216 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 EIF1ADQ8N9N8 165 aaKnown RBP11.28□□□□□ -0.6
CUX1-217ENST00000558836 FEZF2Q8TBJ5 459 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 NLRP7Q8WX94 980 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.28□□□□□ -0.68e-7■■■■■ 64.2
CUX1-217ENST00000558836 TWNKQ96RR1 684 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 SIX4Q9UIU6 781 aa11.28□□□□□ -0.6
CUX1-217ENST00000558836 ASB14A6NK59 587 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 EIF3HO15372 352 aaKnown RBP eCLIP11.27□□□□□ -0.611e-7■■■□□ 16.5
CUX1-217ENST00000558836 CAND2O75155 1236 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 PPFIA2O75334 1257 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 TNNC2P02585 160 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 MYBL1P10243 752 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 HSPA6P17066 643 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 ZNF132P52740 706 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 MAGOHP61326 146 aaKnown RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 LACTBP83111 547 aaPredicted RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 ZNF252P-AS1Q0IIN9 211 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 TFDP1Q14186 410 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 PPP2R5EQ16537 467 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 PLEKHA7Q6IQ23 1121 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 DENND1BQ6P3S1 775 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 DPP9Q86TI2 863 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 PHF13Q86YI8 300 aaPredicted RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 C1orf127Q8N9H9 656 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 ANKRD36BP1Q96IX9 119 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 C2orf40Q9H1Z8 148 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 SMYD3Q9H7B4 428 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 CYTH4Q9UIA0 394 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 CNTN6Q9UQ52 1028 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.27□□□□□ -0.61
CUX1-217ENST00000558836 IVNS1ABPQ9Y6Y0 642 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 LRRC37A2A6NM11 1700 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 PODXLO00592 558 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 ARF4P18085 180 aaPredicted RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 SF3A3Q12874 501 aaKnown RBP eCLIP11.27□□□□□ -0.61
CUX1-217ENST00000558836 GPR162Q16538 588 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 SMTNL2Q2TAL5 461 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 ZC3H15Q8WU90 426 aaKnown RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 LENG1Q96BZ8 264 aaPredicted RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 DDX23Q9BUQ8 820 aaKnown RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 TXLNGYQ9BZA5 131 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 SDCBP2Q9H190 292 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 MRPL47Q9HD33 250 aaKnown RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 PPANQ9NQ55 473 aaKnown RBP11.27□□□□□ -0.61
CUX1-217ENST00000558836 PARVAQ9NVD7 372 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 DOCK3Q8IZD9 2030 aa11.27□□□□□ -0.61
CUX1-217ENST00000558836 SIP14410 1827 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 H3BRB1 525 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 TP73O15350 636 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 ERLIN2O94905 339 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 SNAI1O95863 264 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 CHKAP35790 457 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms