RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ERLIN2O94905 339 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 MSNP26038 577 aaKnown RBP13.64□□□□□ -0.23
SHMT2-230ENST00000557427 GRIN1Q05586 938 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 NCBP1Q09161 790 aaKnown RBP13.64□□□□□ -0.23
SHMT2-230ENST00000557427 ZNF252P-AS1Q0IIN9 211 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 CAPSQ13938 189 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 PSMD5Q16401 504 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 KRT79Q5XKE5 535 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 ARL6IP4Q66PJ3 421 aaKnown RBP13.64□□□□□ -0.23
SHMT2-230ENST00000557427 HAUS3Q68CZ6 603 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 VITQ6UXI7 678 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 KBTBD6Q86V97 674 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 WDR5BQ86VZ2 330 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 DHX40Q8IX18 779 aaKnown RBP13.64□□□□□ -0.23
SHMT2-230ENST00000557427 CNNM3Q8NE01 707 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 SNX29Q8TEQ0 813 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 HASPINQ8TF76 798 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 ZCCHC14Q8WYQ9 949 aaKnown RBP13.64□□□□□ -0.23
SHMT2-230ENST00000557427 TTPALQ9BTX7 342 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 TRMT61BQ9BVS5 477 aaKnown RBP13.64□□□□□ -0.23
SHMT2-230ENST00000557427 RAB34Q9BZG1 259 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 CSRNP2Q9H175 543 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 BHMT2Q9H2M3 363 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 TRPV5Q9NQA5 729 aa13.64□□□□□ -0.23
SHMT2-230ENST00000557427 LRRIQ4A6NIV6 560 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 BECN2A8MW95 431 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 GOLGA6L6A8MZA4 724 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 E9PMD0 336 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 ARNTLO00327 626 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 LAD1O00515 517 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 TSPAN1O60635 241 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 CYP11B2P19099 503 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 CDC25BP30305 580 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 GDI1P31150 447 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 HOXA6P31267 233 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 MBTD1Q05BQ5 628 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 RAB33AQ14088 237 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 PRSS36Q5K4E3 855 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 RNF43Q68DV7 783 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 CDR2LQ86X02 465 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-230ENST00000557427 CEP57Q86XR8 500 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 IGSF22Q8N9C0 903 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 MCPH1Q8NEM0 835 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 TCEAL4Q96EI5 215 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 CCDC34Q96HJ3 373 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 LOXL4Q96JB6 756 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 PLIN2Q99541 437 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 PYM1Q9BRP8 204 aaKnown RBP13.63□□□□□ -0.23
SHMT2-230ENST00000557427 APOL6Q9BWW8 343 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 NXF3Q9H4D5 531 aaKnown RBP13.63□□□□□ -0.23
SHMT2-230ENST00000557427 ZFP14Q9HCL3 533 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 AVENQ9NQS1 362 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-230ENST00000557427 DNM3Q9UQ16 869 aa13.63□□□□□ -0.23
SHMT2-230ENST00000557427 VWA8A3KMH1 1905 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 SPAG17Q6Q759 2223 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 VWA3AA6NCI4 1184 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 KIF4AO95239 1232 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 AKAP5P24588 427 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 IGFBP6P24592 240 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-230ENST00000557427 PRPHP41219 470 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 CCR2P41597 374 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 ZNF75DP51815 510 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 PLCB2Q00722 1185 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 POU5F1BQ06416 359 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 HSP90AA2PQ14568 343 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-230ENST00000557427 DPCR1Q3MIW9 517 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 NT5DC1Q5TFE4 455 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 FAM171A1Q5VUB5 890 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 BSNDQ8WZ55 320 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 ERCC4Q92889 916 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-230ENST00000557427 IRF7Q92985 503 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 ZSWIM3Q96MP5 696 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 ASB16Q96NS5 453 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
SHMT2-230ENST00000557427 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.62□□□□□ -0.23
SHMT2-230ENST00000557427 KLK14Q9P0G3 267 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 GIT1Q9Y2X7 761 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 STK24Q9Y6E0 443 aa13.62□□□□□ -0.23
SHMT2-230ENST00000557427 SF3B1O75533 1304 aaKnown RBP eCLIP13.62□□□□□ -0.235e-8■■■■■ 37.4
SHMT2-230ENST00000557427 SMTNL1A8MU46 457 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 IKBKBO14920 756 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 POLR2DO15514 142 aaKnown RBP13.61□□□□□ -0.23
SHMT2-230ENST00000557427 B4GALT5O43286 388 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 ACTN4O43707 911 aaKnown RBP13.61□□□□□ -0.23
SHMT2-230ENST00000557427 ZNF500O60304 480 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-230ENST00000557427 PSMC3P17980 439 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 MUTP22033 750 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 OR1D2P34982 312 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 VIPR2P41587 438 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 SOX9P48436 509 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 PXNP49023 591 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-230ENST00000557427 PNOCQ13519 176 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 POSTNQ15063 836 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 TMEM132AQ24JP5 1023 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 SH3PXD2AQ5TCZ1 1133 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 NOTUMQ6P988 496 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 TXNDC11Q6PKC3 985 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 TRIML1Q8N9V2 468 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 GAB3Q8WWW8 586 aa13.61□□□□□ -0.23
SHMT2-230ENST00000557427 SERTAD1Q9UHV2 236 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms