RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 CDCA2Q69YH5 1023 aaPredicted RBP5.87□□□□□ -1.47
SRP54-211ENST00000556445 TMEM200BQ69YZ2 307 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 TTLL5Q6EMB2 1281 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 EPM2AIP1Q7L775 607 aaPredicted RBP5.87□□□□□ -1.47
SRP54-211ENST00000556445 GGNQ86UU5 652 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 AACSQ86V21 672 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 RASSF3Q86WH2 238 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 DNAJC10Q8IXB1 793 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 COG1Q8WTW3 980 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 TTC17Q96AE7 1141 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 MAN1C1Q9NR34 630 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 DIAPH3Q9NSV4 1193 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 CHMP5Q9NZZ3 219 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 B4GALT6Q9UBX8 382 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 RAD50Q92878 1312 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 CDHR2Q9BYE9 1310 aa5.87□□□□□ -1.47
SRP54-211ENST00000556445 CICQ96RK0 1608 aaPredicted RBP5.87□□□□□ -1.47
SRP54-211ENST00000556445 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.87□□□□□ -1.47
SRP54-211ENST00000556445 DOT1LQ8TEK3 1739 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 ZNF831Q5JPB2 1677 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 RFX7Q2KHR2 1363 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 A0A0G2JNJ9 132 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 PATE3B3GLJ2 98 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 SNX2O60749 519 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 HMGCRP04035 888 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 JMJD7P0C870 316 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 TNFAIP3P21580 790 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 CCT5P48643 541 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 KIF11P52732 1056 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 RRADP55042 308 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 TMPRSS15P98073 1019 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 ALDH6A1Q02252 535 aaKnown RBP5.86□□□□□ -1.47
SRP54-211ENST00000556445 MOGSQ13724 837 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 ELF2Q15723 593 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 CDC37Q16543 378 aaPredicted RBP5.86□□□□□ -1.47
SRP54-211ENST00000556445 TBR1Q16650 682 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 RNF151Q2KHN1 245 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 CCDC57Q2TAC2 916 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 PARP10Q53GL7 1025 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 TRIM68Q6AZZ1 485 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 XRRA1Q6P2D8 792 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 LMBR1LQ6UX01 489 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 CLIP3Q96DZ5 547 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 NEIL1Q96FI4 390 aaPredicted RBP5.86□□□□□ -1.47
SRP54-211ENST00000556445 KAZALD1Q96I82 304 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 WWC2-AS2Q96NR7 200 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 GNRHR2Q96P88 292 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 LMF1Q96S06 567 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 FOXB1Q99853 325 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 ORAI3Q9BRQ5 295 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 KIAA1683Q9H0B3 1180 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 RETREG1Q9H6L5 497 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 Q9UFV3 132 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 DDX20Q9UHI6 824 aaKnown RBP5.86□□□□□ -1.47
SRP54-211ENST00000556445 CDC42EP3Q9UKI2 254 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 ZBTB21Q9ULJ3 1066 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 PA2G4Q9UQ80 394 aaKnown RBP5.86□□□□□ -1.47
SRP54-211ENST00000556445 DMTF1Q9Y222 760 aa5.86□□□□□ -1.47
SRP54-211ENST00000556445 FRMPD2Q68DX3 1309 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 A0A1W2PRQ8 180 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 MATN2O00339 956 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 AGR2O95994 175 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 RPN1P04843 607 aaKnown RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 SETSIPP0DME0 302 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 PF4V1P10720 104 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 ATP5JP18859 108 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 LPOP22079 712 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 FLT3P36888 993 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 RFX5P48382 616 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 PIP4K2AP48426 406 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 GTF2H3Q13889 308 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 NFYCQ13952 458 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 NOLC1Q14978 699 aaKnown RBP eCLIP5.85□□□□□ -1.47
SRP54-211ENST00000556445 CDSNQ15517 529 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 SEPT7Q16181 437 aaKnown RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 PTPN21Q16825 1174 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 CFAP100Q494V2 611 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 FAM133BQ5BKY9 247 aaKnown RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 DBX2Q6ZNG2 339 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 UBE2R2Q712K3 238 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 OTOP2Q7RTS6 562 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 MAATS1Q7Z4T9 603 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 FAM186BQ8IYM0 893 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 BCL6BQ8N143 479 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 PARD3BQ8TEW8 1205 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 ERCC4Q92889 916 aaPredicted RBP5.85□□□□□ -1.47
SRP54-211ENST00000556445 PGBD4Q96DM1 585 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 TNIP3Q96KP6 325 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 TBATAQ96M53 351 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 LRRC37BQ96QE4 947 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.85□□□□□ -1.47
SRP54-211ENST00000556445 MTFR1LQ9H019 292 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 CABP5Q9NP86 173 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 ANLNQ9NQW6 1124 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 ANKRD6Q9Y2G4 727 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 PCDHGB3Q9Y5G1 929 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 FPGT-TNNI3KV9GXZ4 949 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 ANKRD36CQ5JPF3 1778 aa5.85□□□□□ -1.47
SRP54-211ENST00000556445 NUP98P52948 1817 aa5.84□□□□□ -1.47
SRP54-211ENST00000556445 C1QTNF3-AMACRE9PGA6 284 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms