RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 NOP2P46087 812 aaKnown RBP9.5□□□□□ -0.89
TDP1-210ENST00000554976 GUCY2FP51841 1108 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 BRD3Q15059 726 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 NBPF20Q3BBV1 942 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 BEND6Q5SZJ8 279 aaPredicted RBP9.5□□□□□ -0.89
TDP1-210ENST00000554976 LLGL2Q6P1M3 1020 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 ARRDC4Q8NCT1 418 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 ZNF564Q8TBZ8 553 aaPredicted RBP9.5□□□□□ -0.89
TDP1-210ENST00000554976 CPA5Q8WXQ8 436 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 TSPAN18Q96SJ8 248 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 OSBPL7Q9BZF2 842 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 ELOVL4Q9GZR5 314 aa9.5□□□□□ -0.89
TDP1-210ENST00000554976 NXF3Q9H4D5 531 aaKnown RBP9.5□□□□□ -0.89
TDP1-210ENST00000554976 GEMIN8Q9NWZ8 242 aaKnown RBP9.5□□□□□ -0.89
TDP1-210ENST00000554976 PPEF2O14830 753 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 SASH3O75995 380 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 PGK1P00558 417 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 MARCKSL1P49006 195 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 MRPS6P82932 125 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 SP3Q02447 781 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 C1QBPQ07021 282 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 ZNF252P-AS1Q0IIN9 211 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CFAP221Q4G0U5 840 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 TAF2Q6P1X5 1199 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 ZNF771Q7L3S4 317 aaPredicted RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 PEX26Q7Z412 305 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 HOMEZQ8IX15 550 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 ZNF653Q96CK0 615 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 FAM212AQ96EL1 285 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 BTBD6Q96KE9 485 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 LRRC1Q9BTT6 524 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CELF4Q9BZC1 486 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 LHX5Q9H2C1 402 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CYP3A43Q9HB55 503 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 SEPT11Q9NVA2 429 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 DPP3Q9NY33 737 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 TUBGCP4Q9UGJ1 667 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 NOC2LQ9Y3T9 749 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 FAM170AA1A519 330 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 PIRO00625 290 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 WEE2P0C1S8 567 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 C6orf222P0C671 652 aaPredicted RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 CYP3A5P20815 502 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 RRM1P23921 792 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 POLR2BP30876 1174 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 NAP1L1P55209 391 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 MAMLD1Q13495 774 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 SIX1Q15475 284 aaPredicted RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 FAM26DQ5JW98 314 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 NAA35Q5VZE5 725 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CXCL17Q6UXB2 119 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 ZDHHC14Q8IZN3 488 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 HDAC7Q8WUI4 952 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 KRT35Q92764 455 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 TRIM7Q9C029 511 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CARD9Q9H257 536 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CNOT8Q9UFF9 292 aaKnown RBP9.49□□□□□ -0.89
TDP1-210ENST00000554976 SRRDQ9UH36 339 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 AMFRQ9UKV5 643 aa9.49□□□□□ -0.89
TDP1-210ENST00000554976 CENPFP49454 3210 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 KCNK3O14649 394 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 MAP2K7O14733 419 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 SEC31AO94979 1220 aaKnown RBP9.48□□□□□ -0.89
TDP1-210ENST00000554976 MYBL2P10244 700 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 COMTP21964 271 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 TRPC3Q13507 836 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 DEFB115Q30KQ5 88 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 TRAF7Q6Q0C0 670 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 C7orf31Q8N865 590 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 TRIM11Q96F44 468 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.48□□□□□ -0.892e-6■■□□□ 12.6
TDP1-210ENST00000554976 ADPGKQ9BRR6 497 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 FUT8Q9BYC5 575 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 IMPG2Q9BZV3 1241 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 RNF39Q9H2S5 420 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 GDF3Q9NR23 364 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 PCDHA3Q9Y5H8 950 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 DCAF8L1A6NGE4 600 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 THAP12O43422 761 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 PFKMP08237 780 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 RHOXF2BP0C7M4 288 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 GNAT1P11488 350 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 GABRB2P47870 512 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 PKDCCQ504Y2 493 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 PPP1R2P3Q6NXS1 205 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 CATSPER4Q7RTX7 472 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 SLC43A3Q8NBI5 491 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 RHOXF2Q9BQY4 288 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 ZNF518BQ9C0D4 1074 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 CTTNBP2NLQ9P2B4 639 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 HES2Q9Y543 173 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 IPPQ9Y573 584 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 TRPV2Q9Y5S1 764 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 MIF4GDA9UHW6 222 aaKnown RBP9.48□□□□□ -0.89
TDP1-210ENST00000554976 RECQL4O94761 1208 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 ASGR1P07306 291 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 RARBP10826 455 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 PRKAR2AP13861 404 aaKnown RBP9.48□□□□□ -0.89
TDP1-210ENST00000554976 ELNP15502 786 aa9.48□□□□□ -0.89
TDP1-210ENST00000554976 SSTR3P32745 418 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms