RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 LMAN2Q12907 356 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 MAPK8IP2Q13387 824 aaPredicted RBP15.14■□□□□ 0.01
PRPF39-204ENST00000553605 RUNX3Q13761 415 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 USP39Q53GS9 565 aaKnown RBP15.14■□□□□ 0.01
PRPF39-204ENST00000553605 ARHGAP15Q53QZ3 475 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 GAREM2Q75VX8 874 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 SLFN12Q8IYM2 578 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 CHCHD4Q8N4Q1 142 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 APPL2Q8NEU8 664 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 BEST2Q8NFU1 509 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 DDX12PQ92771 950 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 SUSD3Q96L08 255 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 CCDC113Q9H0I3 377 aa15.14■□□□□ 0.01
PRPF39-204ENST00000553605 NCOA5Q9HCD5 579 aaKnown RBP15.14■□□□□ 0.01
PRPF39-204ENST00000553605 FBRSL1Q9HCM7 1045 aaKnown RBP15.14■□□□□ 0.01
PRPF39-204ENST00000553605 PRAMEF12O95522 483 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 FGF19O95750 216 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 DRD1P21728 446 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 GABRR2P28476 465 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 WEE1P30291 646 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 RPL9P32969 192 aaKnown RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 MAPK8P45983 427 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 GALK1P51570 392 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 YARSP54577 528 aaKnown RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 AMPD2Q01433 879 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 SCAPQ12770 1279 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 DUSP4Q13115 394 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 DMC1Q14565 340 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 FBXO43Q4G163 708 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 XKR4Q5GH76 650 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 ALKAL1Q6UXT8 129 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 DNAJB7Q7Z6W7 309 aaPredicted RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 PIP4P1Q86T03 277 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 MCPH1Q8NEM0 835 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 RPLP0P6Q8NHW5 317 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 PIGKQ92643 395 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 CHFRQ96EP1 664 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 PGLYRP2Q96PD5 576 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 NAP1L4Q99733 375 aaKnown RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 FAM83CQ9BQN1 747 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 TOPORSQ9NS56 1045 aaPredicted RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 EVLQ9UI08 416 aaPredicted RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 ASCC3Q8N3C0 2202 aaKnown RBP15.13■□□□□ 0.01
PRPF39-204ENST00000553605 PCNX2A6NKB5 2137 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 TRIP11Q15643 1979 aa15.13■□□□□ 0.01
PRPF39-204ENST00000553605 OTOL1A6NHN0 477 aaPredicted RBP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 DEXIO95424 95 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 VNN2O95498 520 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 XRCC6P12956 609 aaKnown RBP eCLIP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 ATP2B1P20020 1258 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 MARCKSP29966 332 aaPredicted RBP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 MCM4P33991 863 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 DHPSP49366 369 aaPredicted RBP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 TRIM61Q5EBN2 209 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 ATF7IP2Q5U623 682 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 APBB1IPQ7Z5R6 666 aaPredicted RBP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 ABCA7Q8IZY2 2146 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 DEPTORQ8TB45 409 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 BSNDQ8WZ55 320 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 ZMAT2Q96NC0 199 aaKnown RBP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 TBC1D32Q96NH3 1257 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 NUSAP1Q9BXS6 441 aaKnown RBP15.12■□□□□ 0.01
PRPF39-204ENST00000553605 CRISPLD1Q9H336 500 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 EBF3Q9H4W6 596 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 TASP1Q9H6P5 420 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 HPS4Q9NQG7 708 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 PCDHA12Q9UN75 941 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 ASB3Q9Y575 518 aa15.12■□□□□ 0.01
PRPF39-204ENST00000553605 HELZ2Q9BYK8 2649 aaKnown RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 UPK3BL1B0FP48 263 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 UPK3BL2E5RIL1 263 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 OR4Q2P0C623 313 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 PDIA3P30101 505 aaKnown RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 SEMA3BQ13214 749 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 NT5DC1Q5TFE4 455 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 TRIM68Q6AZZ1 485 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 FAM177A1Q8N128 213 aaPredicted RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 FBXL16Q8N461 479 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 CEP120Q8N960 986 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 GLIS3Q8NEA6 775 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 ADAM32Q8TC27 787 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 HNRNPLLQ8WVV9 542 aaKnown RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 PSMG2Q969U7 264 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 ACDQ96AP0 544 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 P2RY13Q9BPV8 354 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 POLR3CQ9BUI4 534 aaPredicted RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 CCDC94Q9BW85 323 aaPredicted RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 TPSD1Q9BZJ3 242 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 SMG9Q9H0W8 520 aaKnown RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 PCDHB8Q9UN66 801 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 KCNJ14Q9UNX9 436 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 SLC27A5Q9Y2P5 690 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 NUP210Q8TEM1 1887 aaPredicted RBP15.11■□□□□ 0.01
PRPF39-204ENST00000553605 THADAQ6YHU6 1953 aa15.11■□□□□ 0.01
PRPF39-204ENST00000553605 ENGP17813 658 aa15.1■□□□□ 0.01
PRPF39-204ENST00000553605 BCKDHBP21953 392 aa15.1■□□□□ 0.01
PRPF39-204ENST00000553605 GRM5P41594 1212 aa15.1■□□□□ 0.01
PRPF39-204ENST00000553605 NAMPTP43490 491 aa15.1■□□□□ 0.01
PRPF39-204ENST00000553605 OSTNP61366 133 aa15.1■□□□□ 0.01
PRPF39-204ENST00000553605 CYP4F8P98187 520 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms