RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 KNOP1Q1ED39 458 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 KMT5BQ4FZB7 885 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 OVOS1Q6IE37 1185 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 RNF19BQ6ZMZ0 732 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 ALYREFQ86V81 257 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 FSIP1Q8NA03 581 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 KIAA0895Q8NCT3 520 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 RTP3Q9BQQ7 232 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 KCNK12Q9HB15 430 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 SIX4Q9UIU6 781 aa11.1□□□□□ -0.63
CCDC88C-206ENST00000553437 PTPRJQ12913 1337 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 KPNA7A9QM74 516 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 ANHXE9PGG2 379 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 CYB561D2O14569 222 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 PRRG1O14668 218 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 MYL1P05976 194 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 PRR29P0C7W0 189 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 ODC1P11926 461 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 POLR2BP30876 1174 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 ELF1P32519 619 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 ADCY1Q08828 1119 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 PSMD2Q13200 908 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 MYBPC2Q14324 1141 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 WSCD1Q658N2 575 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 KRBA2Q6ZNG9 492 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 GET4Q7L5D6 327 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 USP37Q86T82 979 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 C12orf56Q8IXR9 622 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 UBALD2Q8IYN6 164 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 OR5B17Q8NGF7 314 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 OR10T2Q8NGX3 314 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 ITFG1Q8TB96 612 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 NOC3LQ8WTT2 800 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 CACTINQ8WUQ7 758 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 RSAD2Q8WXG1 361 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 TMEM209Q96SK2 561 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 MTMR12Q9C0I1 747 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 GZF1Q9H116 711 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 CRISPLD1Q9H336 500 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 CYP4F11Q9HBI6 524 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 KIAA1586Q9HCI6 787 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 AVENQ9NQS1 362 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 INTS13Q9NVM9 706 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 IGSF9Q9P2J2 1179 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 CDH7Q9ULB5 785 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 POLIQ9UNA4 740 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 AGAP1Q9UPQ3 857 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 INSL5Q9Y5Q6 135 aa11.09□□□□□ -0.63
CCDC88C-206ENST00000553437 TRIP11Q15643 1979 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 NRG2O14511 850 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 ZNF202O95125 648 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 LRG1P02750 347 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 RPN1P04843 607 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 ITGB3P05106 788 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 RHOP08100 348 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 CPB1P15086 417 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 PNPLA4P41247 253 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 RBP5P82980 135 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 DPYDQ12882 1025 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 TDGQ13569 410 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 SURF1Q15526 300 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 SNRNP35Q16560 246 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 SLC5A9Q2M3M2 681 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 SV2CQ496J9 727 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 PABPC1LQ4VXU2 614 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 LMBRD2Q68DH5 695 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 CENPPQ6IPU0 288 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 HS2ST1Q7LGA3 356 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 SLC44A3Q8N4M1 653 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 CSGALNACT2Q8N6G5 542 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 LRRC52Q8N7C0 313 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 XXYLT1Q8NBI6 393 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 RDH13Q8NBN7 331 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 TMEM174Q8WUU8 243 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 FGF13Q92913 245 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 PBXIP1Q96AQ6 731 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 PGLYRP2Q96PD5 576 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 ZCWPW1Q9H0M4 648 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 KCTD10Q9H3F6 313 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 EXOC1Q9NV70 894 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 DMAC2Q9NW81 257 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 CEP72Q9P209 647 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 CGNQ9P2M7 1197 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 ITGA11Q9UKX5 1188 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 DSEQ9UL01 958 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 ZFP37Q9Y6Q3 630 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 TECTAO75443 2155 aa11.08□□□□□ -0.64
CCDC88C-206ENST00000553437 MTMR11A4FU01 709 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 TULP1O00294 542 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 RHOBTB3O94955 611 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 PDGFBP01127 241 aaPredicted RBP11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 TMEM191BP0C7N4 346 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 PTPN2P17706 415 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 CYP2J2P51589 502 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 CYP24A1Q07973 514 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 TWF1Q12792 350 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 DUSP4Q13115 394 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 HTR4Q13639 388 aa11.07□□□□□ -0.64
CCDC88C-206ENST00000553437 PSMD6Q15008 389 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms