RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PRAMEF14Q5SWL7 426 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 DSTYKQ6XUX3 929 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 KRT28Q7Z3Y7 464 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 CCDC117Q8IWD4 279 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 SLC15A4Q8N697 577 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 AOPEPQ8N6M6 819 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 SIMC1Q8NDZ2 872 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 OR56A3Q8NH54 315 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 DDX17Q92841 729 aaKnown RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 GCDHQ92947 438 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 SPSB4Q96A44 273 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 SEPSECSQ9HD40 501 aaKnown RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 HEYLQ9NQ87 328 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 PAK6Q9NQU5 681 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 MBNL3Q9NUK0 354 aaKnown RBP6.67□□□□□ -1.34
SCFD1-208ENST00000553278 TMX2Q9Y320 296 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 PLEKHM1Q9Y4G2 1056 aa6.67□□□□□ -1.34
SCFD1-208ENST00000553278 A0A087WWL8 130 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 HMX3A6NHT5 357 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 CCER2I3L3R5 266 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 HRKO00198 91 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 NRP1O14786 923 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 MTSS1O43312 755 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ASNA1O43681 348 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 DYRK3O43781 588 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 UNC5CO95185 931 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 DDX58O95786 925 aaKnown RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 A1BGP04217 495 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 GRPP07492 148 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 RAP2AP10114 183 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ALOX15P16050 662 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 CST5P28325 142 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ADD2P35612 726 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ETV4P43268 484 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 MEOX1P50221 254 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 PTH1RQ03431 593 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 RSPO4Q2I0M5 234 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ARHGAP15Q53QZ3 475 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 DCAF12L1Q5VU92 463 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 STK32CQ86UX6 486 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 HEATR4Q86WZ0 1026 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 KRT73Q86Y46 540 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 TTLL6Q8N841 843 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 AGBL5Q8NDL9 886 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 NGDNQ8NEJ9 315 aaKnown RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 SMARCC2Q8TAQ2 1214 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 MDM1Q8TC05 714 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 DHX36Q9H2U1 1008 aaKnown RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 MID2Q9UJV3 735 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ADAMTS6Q9UKP5 1117 aa6.66□□□□□ -1.34
SCFD1-208ENST00000553278 SCAF8Q9UPN6 1271 aaKnown RBP6.66□□□□□ -1.34
SCFD1-208ENST00000553278 ANKRD18BA2A2Z9 1011 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 A6NCN8 305 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 PRSS29PA6NIE9 313 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 TMEM233B4DJY2 109 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 TISP43B9A030 160 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 B9A039 149 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 KIAA0391O15091 583 aaKnown RBP6.65□□□□□ -1.34
SCFD1-208ENST00000553278 SLC43A1O75387 559 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 FAM155BO75949 473 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 MED26O95402 600 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 RNASE1P07998 156 aaKnown RBP6.65□□□□□ -1.34
SCFD1-208ENST00000553278 SBK3P0C264 359 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 FBLN1P23142 703 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 LIFRP42702 1097 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 SLC11A2P49281 568 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 NAP1L1P55209 391 aaKnown RBP6.65□□□□□ -1.34
SCFD1-208ENST00000553278 UCP3P55916 312 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 NUCB1Q02818 461 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 MAPK7Q13164 816 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 SMAD4Q13485 552 aaKnown RBP6.65□□□□□ -1.34
SCFD1-208ENST00000553278 SLC29A2Q14542 456 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 MAPKAPK3Q16644 382 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 AMOTQ4VCS5 1084 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 AFMIDQ63HM1 303 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 TRIM68Q6AZZ1 485 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 OTUD7BQ6GQQ9 843 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 B3GNT8Q7Z7M8 397 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 PDSS2Q86YH6 399 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 NLGN4YQ8NFZ3 816 aaPredicted RBP6.65□□□□□ -1.34
SCFD1-208ENST00000553278 HERVK_113Q902F9 699 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 LPPQ93052 612 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 PLEKHA5Q9HAU0 1116 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 FEM1BQ9UK73 627 aa6.65□□□□□ -1.34
SCFD1-208ENST00000553278 CCDC196A0A1B0GTZ2 297 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 FCHO1O14526 889 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 KCNQ3O43525 872 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 NPPBP16860 134 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 PFKLP17858 780 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 EGR1P18146 543 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 BTF3P20290 206 aaKnown RBP6.64□□□□□ -1.35
SCFD1-208ENST00000553278 ACVR2AP27037 513 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 MC3RP41968 323 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 PSMC1P62191 440 aaKnown RBP6.64□□□□□ -1.35
SCFD1-208ENST00000553278 VAMP2P63027 116 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 ADAM15Q13444 863 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 TOP3AQ13472 1001 aaPredicted RBP6.64□□□□□ -1.35
SCFD1-208ENST00000553278 FAM47AQ5JRC9 791 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 SPATA1Q5VX52 437 aa6.64□□□□□ -1.35
SCFD1-208ENST00000553278 ITPRIPL1Q6GPH6 555 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms