RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SLC39A11Q8N1S5 342 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 ZNF397Q8NF99 534 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-211ENST00000552338 OR8K1Q8NGG5 319 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 OXCT2Q9BYC2 517 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-211ENST00000552338 MARCH5Q9NX47 278 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 AJAP1Q9UKB5 411 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-211ENST00000552338 ADAM28Q9UKQ2 775 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 DSEQ9UL01 958 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 INPP5FQ9Y2H2 1132 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 FAN1Q9Y2M0 1017 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 R3HCC1Q9Y3T6 440 aaKnown RBP10.26□□□□□ -0.77
LIMA1-211ENST00000552338 RWDD3Q9Y3V2 267 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 PTPRDP23468 1912 aa10.26□□□□□ -0.77
LIMA1-211ENST00000552338 PDE4DIPQ5VU43 2346 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 A0A1W2PPC1 479 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 CASTOR2A6NHX0 329 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 ZBBXA8MT70 800 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 GOLGA6L6A8MZA4 724 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 FOXN3O00409 490 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 TRAPPC3O43617 180 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 UPP2O95045 317 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 OAZ2O95190 189 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 RB1P06400 928 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PAEPP09466 180 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 TPM1P09493 284 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 CCDC172P0C7W6 258 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 FGFR3P22607 806 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 IGFBP6P24592 240 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 ANXA13P27216 316 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 KRT9P35527 623 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 SOX5P35711 763 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PPM1AP35813 382 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 STAT1P42224 750 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 LHX1P48742 406 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 ALDH7A1P49419 539 aaKnown RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 TNNC1P63316 161 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 APBA1Q02410 837 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 BTG3Q14201 252 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 GJB7Q6PEY0 223 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 WDR59Q6PJI9 974 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 KCNT2Q6UVM3 1135 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 RRAGAQ7L523 313 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 CACNA2D4Q7Z3S7 1137 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PPFIBP1Q86W92 1011 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 TMEM130Q8N3G9 435 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PPM1KQ8N3J5 372 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 WHAMMQ8TF30 809 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 KBTBD7Q8WVZ9 684 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 IGSF21Q96ID5 467 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 SENP8Q96LD8 212 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 SAMD11Q96NU1 681 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 YME1L1Q96TA2 773 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 SYT11Q9BT88 431 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PLVAPQ9BX97 442 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 SDCBP2Q9H190 292 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 AAASQ9NRG9 546 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 CHST7Q9NS84 486 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 CISHQ9NSE2 258 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 ABHD10Q9NUJ1 306 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 KIAA1257Q9ULG3 409 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 BARX2Q9UMQ3 279 aaPredicted RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PCDHB8Q9UN66 801 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 LZTS1Q9Y250 596 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PCDHA11Q9Y5I1 949 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 BZW2Q9Y6E2 419 aaKnown RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 MRPL42Q9Y6G3 142 aaKnown RBP10.25□□□□□ -0.77
LIMA1-211ENST00000552338 PLXNA4Q9HCM2 1894 aa10.25□□□□□ -0.77
LIMA1-211ENST00000552338 SSU72P8A0A1W2PR75 194 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 H0YGN5 161 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 CYB561D2O14569 222 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 TBC1D4O60343 1298 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 HUS1O60921 280 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 GFPT2O94808 682 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 KIF4AO95239 1232 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 ITGB1P05556 798 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 FERP16591 822 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 CLCN1P35523 988 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 OR1G1P47890 313 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 BPIFB4P59827 614 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 PTPN21Q16825 1174 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 HGSNATQ68CP4 663 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-211ENST00000552338 DDX53Q86TM3 631 aaKnown RBP10.24□□□□□ -0.77
LIMA1-211ENST00000552338 ZNF677Q86XU0 584 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 TMEM139Q8IV31 216 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 LRRC8AQ8IWT6 810 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 FIBCD1Q8N539 461 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 COLGALT1Q8NBJ5 622 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 APPL2Q8NEU8 664 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 KAT5Q92993 513 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 PCMTD1Q96MG8 357 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-211ENST00000552338 ZNF558Q96NG5 402 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 SPAG5Q96R06 1193 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 ACBD6Q9BR61 282 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 NLRC4Q9NPP4 1024 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 L1RE1Q9UN81 338 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 POLIQ9UNA4 740 aa10.24□□□□□ -0.77
LIMA1-211ENST00000552338 STXBP5LQ9Y2K9 1186 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms