RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ZNF699Q32M78 642 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 WDR72Q3MJ13 1102 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 ZNF667Q5HYK9 610 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 VARS2Q5ST30 1063 aaKnown RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 RBM23Q86U06 439 aaKnown RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 IRF2BP1Q8IU81 584 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 TMEM86AQ8N2M4 240 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 MICALL1Q8N3F8 863 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 LNX1Q8TBB1 728 aaPredicted RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 AUTS2Q8WXX7 1259 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 FAM84AQ96KN4 292 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 B3GALT6Q96L58 329 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 VRTNQ9H8Y1 702 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 RXFP1Q9HBX9 757 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 SAMSN1Q9NSI8 373 aaKnown RBP14.79□□□□□ -0.04
PTCH1-213ENST00000546820 FANCLQ9NW38 375 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 RAB20Q9NX57 234 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 BACE2Q9Y5Z0 518 aa14.79□□□□□ -0.04
PTCH1-213ENST00000546820 KCNJ18B7U540 433 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 OAZ2O95190 189 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 VNN1O95497 513 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 NRIP1P48552 1158 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 NDUFV1P49821 464 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 MRPL58Q14197 206 aaKnown RBP14.78□□□□□ -0.04
PTCH1-213ENST00000546820 KCNJ12Q14500 433 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 CTXN3Q4LDR2 81 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 TCP11X2Q5H9J9 407 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 TCEAL5Q5H9L2 206 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 RTP2Q5QGT7 225 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 OVOS1Q6IE37 1185 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 ZNF280DQ6N043 979 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 ELMSAN1Q6PJG2 1045 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 TOP6BLQ8N6T0 577 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 SPATA18Q8TC71 538 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 TAS1R2Q8TE23 839 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 FAXDC2Q96IV6 333 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 KLHL5Q96PQ7 755 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 TUBGCP2Q9BSJ2 902 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 ANP32EQ9BTT0 268 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 IGFLR1Q9H665 355 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 MTRRQ9UBK8 725 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 NXF1Q9UBU9 619 aaKnown RBP14.78□□□□□ -0.04
PTCH1-213ENST00000546820 DPP7Q9UHL4 492 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 STXBP5LQ9Y2K9 1186 aa14.78□□□□□ -0.04
PTCH1-213ENST00000546820 TIMM13Q9Y5L4 95 aaPredicted RBP14.78□□□□□ -0.04
PTCH1-213ENST00000546820 SCN1AP35498 2009 aa14.77□□□□□ -0.04
PTCH1-213ENST00000546820 PER2O15055 1255 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 C1RP00736 705 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 ASS1P00966 412 aaKnown RBP14.77□□□□□ -0.05
PTCH1-213ENST00000546820 CNPP09543 421 aaKnown RBP14.77□□□□□ -0.05
PTCH1-213ENST00000546820 SRGAP2BP0DMP2 458 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 LHX1P48742 406 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 CCDC85BQ15834 202 aaPredicted RBP14.77□□□□□ -0.05
PTCH1-213ENST00000546820 MAN2A1Q16706 1144 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 DUSP6Q16828 381 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 CBWD6Q4V339 395 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 CBWD3Q5JTY5 395 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 CBWD5Q5RIA9 395 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 WSCD1Q658N2 575 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 PRSS55Q6UWB4 352 aaPredicted RBP14.77□□□□□ -0.05
PTCH1-213ENST00000546820 AOPEPQ8N6M6 819 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 PPM1EQ8WY54 764 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 DNAI2Q9GZS0 605 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 XYLT2Q9H1B5 865 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 COQ4Q9Y3A0 265 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 PCDHGC5Q9Y5F6 944 aa14.77□□□□□ -0.05
PTCH1-213ENST00000546820 OR6C75A6NL08 312 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 GOLGA6L19H0YKK7 550 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 PES1O00541 588 aaKnown RBP14.76□□□□□ -0.05
PTCH1-213ENST00000546820 TEX28O15482 410 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 CLASP2O75122 1294 aaKnown RBP14.76□□□□□ -0.05
PTCH1-213ENST00000546820 OR1D2P34982 312 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 MYL7Q01449 175 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 HYAL1Q12794 435 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 SKIV2LQ15477 1246 aaKnown RBP14.76□□□□□ -0.05
PTCH1-213ENST00000546820 SOWAHAQ2M3V2 549 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 VWA3BQ502W6 1294 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 HSP90AA4PQ58FG1 418 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 CDKAL1Q5VV42 579 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 SCARA3Q6AZY7 606 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 LRSAM1Q6UWE0 723 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 PDCL2Q8N4E4 241 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 EFHBQ8N7U6 833 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 CLSTN3Q9BQT9 956 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 SNX25Q9H3E2 840 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 NDST4Q9H3R1 872 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 TSPY26PQ9H489 355 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 FBXL5Q9UKA1 691 aa14.76□□□□□ -0.05
PTCH1-213ENST00000546820 COL4A4P53420 1690 aaPredicted RBP14.76□□□□□ -0.05
PTCH1-213ENST00000546820 TACC1O75410 805 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 RPL17P18621 184 aaKnown RBP14.75□□□□□ -0.05
PTCH1-213ENST00000546820 TRIM21P19474 475 aaKnown RBP14.75□□□□□ -0.05
PTCH1-213ENST00000546820 PCSK1P29120 753 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 GNL1P36915 607 aaPredicted RBP14.75□□□□□ -0.05
PTCH1-213ENST00000546820 RAB33AQ14088 237 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 ADGRD2Q7Z7M1 963 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 PALB2Q86YC2 1186 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 ADGRF2Q8IZF7 708 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 TTC39CQ8N584 583 aa14.75□□□□□ -0.05
PTCH1-213ENST00000546820 EHBP1Q8NDI1 1231 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms