RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CARD9Q9H257 536 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 GALNT8Q9NY28 637 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 TUBA8Q9NY65 449 aaPredicted RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 DLGAP2Q9P1A6 1054 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 NCANO14594 1321 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PFASO15067 1338 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MYH10P35580 1976 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 HTTP42858 3142 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MAPK13O15264 365 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 NCK2O43639 380 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CEP104O60308 925 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PPP1R11O60927 126 aaPredicted RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 LILRB3O75022 631 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ALAS1P13196 640 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PTPN4P29074 926 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PIK3CAP42336 1068 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 SLC1A4P43007 532 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 TUBP50607 506 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CACNA2D1P54289 1103 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 HAND2P61296 217 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 HTRA3P83110 453 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 STRN3Q13033 797 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 RAPGEF1Q13905 1077 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 GRM2Q14416 872 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 MUM1Q2TAK8 710 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CNPY1Q3B7I2 92 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 FOXB2Q5VYV0 432 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 C3orf62Q6ZUJ4 267 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 CLEC10AQ8IUN9 316 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 C17orf50Q8WW18 174 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 SLCO2A1Q92959 643 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 ITPKCQ96DU7 683 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 NUDCD1Q96RS6 583 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PRMT1Q99873 361 aaKnown RBP5.58□□□□□ -1.52
USP28-213ENST00000544967 FAM167BQ9BTA0 163 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 OSBPL2Q9H1P3 480 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 JMJD4Q9H9V9 463 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 C17orf75Q9HAS0 396 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PLK2Q9NYY3 685 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 PCYOX1Q9UHG3 505 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 TFR2Q9UP52 801 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 GDAQ9Y2T3 454 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 DOCK3Q8IZD9 2030 aa5.58□□□□□ -1.52
USP28-213ENST00000544967 UMODL1Q5DID0 1318 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 FKTNO75072 461 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PRDM1O75626 825 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ATP5BP06576 529 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 HSPA1AP0DMV8 641 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 HSPA1BP0DMV9 641 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 MUTP22033 750 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ENPP1P22413 925 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 IL4RP24394 825 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 MARK3P27448 753 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 RFC5P40937 340 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 CD97P48960 835 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ARHGAP4P98171 946 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SLC34A1Q06495 639 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 NFX1Q12986 1120 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 WTAPQ15007 396 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 RASA2Q15283 850 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 NPY5RQ15761 445 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PKN1Q16512 942 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 LIN52Q52LA3 116 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SLC45A4Q5BKX6 768 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 FAM83BQ5T0W9 1011 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 IFIT1BQ5T764 474 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 SYDE2Q5VT97 1194 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 INTS8Q75QN2 995 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 CCDC80Q76M96 950 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 FAM133AQ8N9E0 248 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 GPRC5AQ8NFJ5 357 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 LRRC8CQ8TDW0 803 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 DIS3LQ8TF46 1054 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 PRCCQ92733 491 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 DDX12PQ92771 950 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 LENG1Q96BZ8 264 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 SPATC1LQ9H0A9 340 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ZNF408Q9H9D4 720 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ARNT2Q9HBZ2 717 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 NMRK1Q9NWW6 199 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 FBXO40Q9UH90 709 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ASTN1O14525 1302 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 MCM3APO60318 1980 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 SCN10AQ9Y5Y9 1956 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 GRXCR2A6NFK2 248 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 DCDC2CA8MYV0 355 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ATP2C2O75185 946 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 TPPPO94811 219 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 ASLP04424 464 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 HOXD8P13378 290 aaPredicted RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 CHRNA3P32297 505 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 CXCR5P32302 372 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 PMS1P54277 932 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 PTGDRQ13258 359 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 NR5A1Q13285 461 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 DGKZQ13574 1117 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 AUHQ13825 339 aaKnown RBP5.57□□□□□ -1.52
USP28-213ENST00000544967 GIT2Q14161 759 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 BORAQ6PGQ7 559 aa5.57□□□□□ -1.52
USP28-213ENST00000544967 C16orf54Q6UWD8 224 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms