RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 BRCC3P46736 316 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 LHX1P48742 406 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 FXR1P51114 621 aaKnown RBP eCLIP13.07□□□□□ -0.32
DDX55-210ENST00000543016 COPB1P53618 953 aaKnown RBP13.07□□□□□ -0.32
DDX55-210ENST00000543016 MRPL58Q14197 206 aaKnown RBP13.07□□□□□ -0.32
DDX55-210ENST00000543016 GRIN2CQ14957 1233 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 WDR72Q3MJ13 1102 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 LIMS2Q7Z4I7 341 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 LUZP1Q86V48 1076 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 THEM5Q8N1Q8 247 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 MRPL43Q8N983 215 aaKnown RBP13.07□□□□□ -0.32
DDX55-210ENST00000543016 EHBP1Q8NDI1 1231 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 MICAL1Q8TDZ2 1067 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 HASPINQ8TF76 798 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 JAKMIP2Q96AA8 810 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 GAS2L1Q99501 681 aaPredicted RBP13.07□□□□□ -0.32
DDX55-210ENST00000543016 TCF25Q9BQ70 676 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 VN1R3Q9BXE9 311 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 EMILIN2Q9BXX0 1053 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 RXFP1Q9HBX9 757 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 ENTPD7Q9NQZ7 604 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 FNIP2Q9P278 1114 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 DAAM1Q9Y4D1 1078 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 SNX9Q9Y5X1 595 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 NLRC5Q86WI3 1866 aa13.07□□□□□ -0.32
DDX55-210ENST00000543016 OR6C75A6NL08 312 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 F8W810 466 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 NCK2O43639 380 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 LILRB3O75022 631 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 CXCL14O95715 111 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 TRIM21P19474 475 aaKnown RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 TBXAS1P24557 533 aaPredicted RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 YWHAEP62258 255 aaKnown RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 NOP14P78316 857 aaKnown RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 YWHAHQ04917 246 aaPredicted RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 CAMK1Q14012 370 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 EXOC3L4Q17RC7 722 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 HSP90AA4PQ58FG1 418 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 MIIPQ5JXC2 388 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 VARS2Q5ST30 1063 aaKnown RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 ZNF280DQ6N043 979 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 ENOSF1Q7L5Y1 443 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 SPRED2Q7Z698 418 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 PPFIBP1Q86W92 1011 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 CEP57Q86XR8 500 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 GDPD5Q8WTR4 605 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 RIN2Q8WYP3 895 aaPredicted RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 NT5C1BQ96P26 610 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 CDCA3Q99618 268 aaPredicted RBP13.06□□□□□ -0.32
DDX55-210ENST00000543016 NIF3L1Q9GZT8 377 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 PRDM12Q9H4Q4 367 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 MAFFQ9ULX9 164 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 KIAA1671Q9BY89 1806 aa13.06□□□□□ -0.32
DDX55-210ENST00000543016 C2orf71A6NGG8 1288 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 EPOPA6NHQ4 379 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 LGALS16A8MUM7 142 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 PES1O00541 588 aaKnown RBP13.05□□□□□ -0.32
DDX55-210ENST00000543016 CLSTN1O94985 981 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 TPM3P06753 285 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 RFX1P22670 979 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 WARSP23381 471 aaKnown RBP13.05□□□□□ -0.32
DDX55-210ENST00000543016 DNAJB1P25685 340 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 PCSK1P29120 753 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 TKTP29401 623 aaKnown RBP13.05□□□□□ -0.32
DDX55-210ENST00000543016 ERVFC1P60507 584 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 SMARCB1Q12824 385 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 PTPN14Q15678 1187 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 SOWAHAQ2M3V2 549 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 RTP2Q5QGT7 225 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 OVOS1Q6IE37 1185 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 TAS1R1Q7RTX1 841 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 DEFB123Q8N688 67 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 LMO3Q8TAP4 145 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 LNX1Q8TBB1 728 aaPredicted RBP13.05□□□□□ -0.32
DDX55-210ENST00000543016 SEMA4DQ92854 862 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 FAM84AQ96KN4 292 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 MMS19Q96T76 1030 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 BCO2Q9BYV7 579 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 TAB2Q9NYJ8 693 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 GCNT4Q9P109 453 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 MTRRQ9UBK8 725 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 NXF1Q9UBU9 619 aaKnown RBP13.05□□□□□ -0.32
DDX55-210ENST00000543016 DPP7Q9UHL4 492 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 SCN1AP35498 2009 aa13.05□□□□□ -0.32
DDX55-210ENST00000543016 I3L4J1 428 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 GABRDO14764 452 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 TBC1D4O60343 1298 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 SERPINC1P01008 464 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 ADH1AP07327 375 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 ATP1A3P13637 1013 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 IGFBP6P24592 240 aaPredicted RBP13.04□□□□□ -0.32
DDX55-210ENST00000543016 NDUFV1P49821 464 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 GCNT1Q02742 428 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 PSMD5Q16401 504 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 CTXN3Q4LDR2 81 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 WSCD1Q658N2 575 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 SLC8B1Q6J4K2 584 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 ELMSAN1Q6PJG2 1045 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 RTL10Q7L3V2 364 aa13.04□□□□□ -0.32
DDX55-210ENST00000543016 APTXQ7Z2E3 356 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms