RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GDPD5Q8WTR4 605 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 FAXDC2Q96IV6 333 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 CRACR2AQ9BSW2 395 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 INTS2Q9H0H0 1204 aaKnown RBP18.37■□□□□ 0.53
LIG1-204ENST00000542460 ZBP1Q9H171 429 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 RTN4Q9NQC3 1192 aaKnown RBP18.37■□□□□ 0.53
LIG1-204ENST00000542460 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.37■□□□□ 0.532e-9■■■■■ 203.2
LIG1-204ENST00000542460 SSX2IPQ9Y2D8 614 aa18.37■□□□□ 0.53
LIG1-204ENST00000542460 CYP11A1P05108 521 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 URODP06132 367 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 FAM163BP0C2L3 166 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 CTSAP10619 480 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 GLUD2P49448 558 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 ERVFC1P60507 584 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 DSG1Q02413 1049 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 UBXN1Q04323 297 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 CAMK1Q14012 370 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 GRIN2CQ14957 1233 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 RTP2Q5QGT7 225 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 KIAA0319Q5VV43 1072 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 PDE12Q6L8Q7 609 aaKnown RBP18.36■□□□□ 0.53
LIG1-204ENST00000542460 PDXDC1Q6P996 788 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 LIMS2Q7Z4I7 341 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 METTL23Q86XA0 190 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 GPR65Q8IYL9 337 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 TMEM86AQ8N2M4 240 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 ELMO3Q96BJ8 720 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 B3GALT6Q96L58 329 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 TCF25Q9BQ70 676 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 NIF3L1Q9GZT8 377 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 APOBEC3GQ9HC16 384 aaKnown RBP18.36■□□□□ 0.53
LIG1-204ENST00000542460 NGRNQ9NPE2 291 aaKnown RBP18.36■□□□□ 0.53
LIG1-204ENST00000542460 ENTPD7Q9NQZ7 604 aa18.36■□□□□ 0.53
LIG1-204ENST00000542460 TIMM13Q9Y5L4 95 aaPredicted RBP18.36■□□□□ 0.53
LIG1-204ENST00000542460 NLRC5Q86WI3 1866 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 A0A1B0GTH6 734 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 RFXAPO00287 272 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 LPXNO60711 386 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 SLC9A1P19634 815 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 PON1P27169 355 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 LRMPQ12912 555 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 PTPROQ16827 1216 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 SOWAHAQ2M3V2 549 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 WSCD1Q658N2 575 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 TRIM65Q6PJ69 517 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 ANKS3Q6ZW76 656 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 PDCL2Q8N4E4 241 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 SPATA18Q8TC71 538 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 MICAL1Q8TDZ2 1067 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 RIN2Q8WYP3 895 aaPredicted RBP18.35■□□□□ 0.53
LIG1-204ENST00000542460 PIK3R5Q8WYR1 880 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 NAP1L5Q96NT1 182 aaPredicted RBP18.35■□□□□ 0.53
LIG1-204ENST00000542460 NT5C1BQ96P26 610 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 PRDM12Q9H4Q4 367 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 MRPL17Q9NRX2 175 aaKnown RBP18.35■□□□□ 0.53
LIG1-204ENST00000542460 L1RE1Q9UN81 338 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 POLIQ9UNA4 740 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 CHD7Q9P2D1 2997 aa18.35■□□□□ 0.53
LIG1-204ENST00000542460 H7C4K7 107 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 TACC1O75410 805 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 OAZ2O95190 189 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 CXCL14O95715 111 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 ASPAP45381 313 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 UBASH3AP57075 661 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 YWHAHQ04917 246 aaPredicted RBP18.34■□□□□ 0.53
LIG1-204ENST00000542460 KCNMA1Q12791 1236 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 MRPL58Q14197 206 aaKnown RBP18.34■□□□□ 0.53
LIG1-204ENST00000542460 SMC1AQ14683 1233 aaKnown RBP18.34■□□□□ 0.53
LIG1-204ENST00000542460 NR1I3Q14994 352 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 VARS2Q5ST30 1063 aaKnown RBP18.34■□□□□ 0.53
LIG1-204ENST00000542460 OVOS1Q6IE37 1185 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 LNX1Q8TBB1 728 aaPredicted RBP18.34■□□□□ 0.53
LIG1-204ENST00000542460 TATDN2Q93075 761 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 STXBP5LQ9Y2K9 1186 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 IRAK3Q9Y616 596 aa18.34■□□□□ 0.53
LIG1-204ENST00000542460 C2CD2LO14523 706 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 FSCN2O14926 492 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 SCN1AP35498 2009 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 PTPN14Q15678 1187 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 ADGRF2Q8IZF7 708 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 MRPL43Q8N983 215 aaKnown RBP18.33■□□□□ 0.53
LIG1-204ENST00000542460 MRPL38Q96DV4 380 aaKnown RBP18.33■□□□□ 0.53
LIG1-204ENST00000542460 ERGIC2Q96RQ1 377 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 OXCT2Q9BYC2 517 aaPredicted RBP18.33■□□□□ 0.53
LIG1-204ENST00000542460 BCO2Q9BYV7 579 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 CYP3A43Q9HB55 503 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.33■□□□□ 0.53
LIG1-204ENST00000542460 LMCD1Q9NZU5 365 aa18.33■□□□□ 0.53
LIG1-204ENST00000542460 TEX33O43247 280 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 LILRB3O75022 631 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 TBXAS1P24557 533 aaPredicted RBP18.33■□□□□ 0.52
LIG1-204ENST00000542460 IRS1P35568 1242 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 LHX1P48742 406 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 CREMQ03060 361 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 CUL2Q13617 745 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 PSMD5Q16401 504 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 ZNF280DQ6N043 979 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 PHLDB3Q6NSJ2 640 aa18.33■□□□□ 0.52
LIG1-204ENST00000542460 PRSS55Q6UWB4 352 aaPredicted RBP18.33■□□□□ 0.52
LIG1-204ENST00000542460 SCARA5Q6ZMJ2 495 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms