RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.5□□□□□ -0.73
YBX3-212ENST00000542002 LRRIQ3A6PVS8 624 aaPredicted RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 C2CD4DB7Z1M9 353 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 NRG2O14511 850 aaPredicted RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 CCL16O15467 120 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 HCRTO43612 131 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 AKAP3O75969 853 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 C4BPAP04003 597 aaKnown RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 C8AP07357 584 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 KRT19P08727 400 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 ATF2P15336 505 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 MTHFRP42898 656 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 UBE2HP62256 183 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 NTHL1P78549 312 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 RBP5P82980 135 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 SOWAHAQ2M3V2 549 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 ZNF658Q5TYW1 1059 aaPredicted RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 ANKRD40Q6AI12 368 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 OVOS1Q6IE37 1185 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 LIMS2Q7Z4I7 341 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 RNF135Q8IUD6 432 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 WDR49Q8IV35 697 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 PDCL2Q8N4E4 241 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 GOLGA5Q8TBA6 731 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 SLC7A14Q8TBB6 771 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 SMG7Q92540 1137 aaKnown RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 SMARCE1Q969G3 411 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 RIPOR3Q96MK2 946 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 IPO9Q96P70 1041 aaKnown RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 CGRRF1Q99675 332 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 WDR6Q9NNW5 1121 aaKnown RBP10.49□□□□□ -0.73
YBX3-212ENST00000542002 HCFC1R1Q9NWW0 138 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 ZDHHC7Q9NXF8 308 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 L1RE1Q9UN81 338 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 PLXNA3P51805 1871 aa10.49□□□□□ -0.73
YBX3-212ENST00000542002 CITO14578 2027 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 SPDYE4A6NLX3 237 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 PPP1R3GB7ZBB8 358 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 PI4K2BG5E9Z4 385 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 CALUO43852 315 aaPredicted RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 KINO60870 393 aaKnown RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 SMC2O95347 1197 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 VNN1O95497 513 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TMEM191BP0C7N4 346 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ODC1P11926 461 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TNNI1P19237 187 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 NR2F2P24468 414 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 MCCD1P59942 119 aaPredicted RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 ADCY1Q08828 1119 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 BFSP1Q12934 665 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ADAM9Q13443 819 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 MYBPC2Q14324 1141 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 SURF1Q15526 300 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 CAMK4Q16566 473 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 NFIL3Q16649 462 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 UVSSAQ2YD98 709 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 SV2CQ496J9 727 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 COBLL1Q53SF7 1204 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 PPM1LQ5SGD2 360 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TDRD10Q5VZ19 366 aaKnown RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 CEP135Q66GS9 1140 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 CENPPQ6IPU0 288 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ZNF280DQ6N043 979 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 GRASPQ7Z6J2 395 aaPredicted RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 USP37Q86T82 979 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 OSTM1Q86WC4 334 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TCEAL8Q8IYN2 117 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ADSSL1Q8N142 457 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TTC9BQ8N6N2 239 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 LRRC52Q8N7C0 313 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ATAD1Q8NBU5 361 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ST13P5Q8NFI4 369 aaPredicted RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 CCDC47Q96A33 483 aaKnown RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 HPDLQ96IR7 371 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ANKRD36BP1Q96IX9 119 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 NECTIN4Q96NY8 510 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 PGLYRP2Q96PD5 576 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 FNBP1Q96RU3 617 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 RHOBTB2Q9BYZ6 727 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 XYLT2Q9H1B5 865 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 CYP4F11Q9HBI6 524 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 LMBRD1Q9NUN5 540 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TMLHEQ9NVH6 421 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 GDAP2Q9NXN4 497 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 DNMT3BQ9UBC3 853 aaKnown RBP10.48□□□□□ -0.73
YBX3-212ENST00000542002 SLC27A5Q9Y2P5 690 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 NME7Q9Y5B8 376 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 SNX9Q9Y5X1 595 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 ANK1P16157 1881 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 TTC28Q96AY4 2481 aa10.48□□□□□ -0.73
YBX3-212ENST00000542002 PDCD11Q14690 1871 aaKnown RBP10.47□□□□□ -0.73
YBX3-212ENST00000542002 ARHGEF37A1IGU5 675 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 TRIM49BA6NDI0 452 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 OR6C75A6NL08 312 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 BIN1O00499 593 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 GABRDO14764 452 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 LRRN2O75325 713 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 SOAT2O75908 522 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 TNNC2P02585 160 aa10.47□□□□□ -0.73
YBX3-212ENST00000542002 HNRNPA1P09651 372 aaKnown RBP eCLIP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms