RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PPP3CAQ08209 521 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 SMARCB1Q12824 385 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 WDR72Q3MJ13 1102 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 C1orf220Q5T0J3 134 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 FKBP15Q5T1M5 1219 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 ZNF280DQ6N043 979 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 IRF2BP1Q8IU81 584 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 MRPL43Q8N983 215 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 CXorf38Q8TB03 319 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 SENP8Q96LD8 212 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 TCF25Q9BQ70 676 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 NDST4Q9H3R1 872 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 SAMSN1Q9NSI8 373 aaKnown RBP18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 BACE2Q9Y5Z0 518 aa18.81■□□□□ 0.6
CLSTN3-210ENST00000540931 PTPRJQ12913 1337 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 CYB561D2O14569 222 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 FSCN2O14926 492 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 GRM6O15303 877 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 CLSTN1O94985 981 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 OAZ2O95190 189 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 CXCL14O95715 111 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 ASS1P00966 412 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 HLA-DRAP01903 254 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 TPM3P06753 285 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 ADH1AP07327 375 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 SRGAP2BP0DMP2 458 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 TBXAS1P24557 533 aaPredicted RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 MRPS5P82675 430 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 YWHAHQ04917 246 aaPredicted RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 VWA3BQ502W6 1294 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 RTL10Q7L3V2 364 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 TMEM173Q86WV6 379 aaPredicted RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 C3orf58Q8NDZ4 430 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 ADAMTS19Q8TE59 1207 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 GPR62Q9BZJ7 368 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 NSUN3Q9H649 340 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 CYP3A43Q9HB55 503 aa18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 LIMA1Q9UHB6 759 aaKnown RBP18.8■□□□□ 0.6
CLSTN3-210ENST00000540931 OR6C75A6NL08 312 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 TACC1O75410 805 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 CST3P01034 146 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 ZNF18P17022 549 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 PCSK1P29120 753 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 GUCY2FP51841 1108 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 NCAPHQ15003 741 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 IQCB1Q15051 598 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 CCDC85BQ15834 202 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 KIAA0319Q5VV43 1072 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 GBP6Q6ZN66 633 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 CEP57Q86XR8 500 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 DHX40Q8IX18 779 aaKnown RBP18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 HASPINQ8TF76 798 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 GDPD5Q8WTR4 605 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 JAKMIP2Q96AA8 810 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 MMRN2Q9H8L6 949 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 RXFP1Q9HBX9 757 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 RAPGEFL1Q9UHV5 662 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 SNX9Q9Y5X1 595 aa18.79■□□□□ 0.6
CLSTN3-210ENST00000540931 PES1O00541 588 aaKnown RBP18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 BRCC3P46736 316 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 NDUFV1P49821 464 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 MYL6P60660 151 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 PSMD5Q16401 504 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 OVOS1Q6IE37 1185 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 CD300LGQ6UXG3 332 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 ENOSF1Q7L5Y1 443 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 BCL7CQ8WUZ0 217 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 RIN2Q8WYP3 895 aaPredicted RBP18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 MMS19Q96T76 1030 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 XYLT2Q9H1B5 865 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 CBX8Q9HC52 389 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 CHD7Q9P2D1 2997 aa18.78■□□□□ 0.6
CLSTN3-210ENST00000540931 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 VNN1O95497 513 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 RFX1P22670 979 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 IGFBP4P22692 258 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 NOP14P78316 857 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 MRPL58Q14197 206 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 PTPN14Q15678 1187 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 MAPRE1Q15691 268 aaKnown RBP18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 EXOC3L4Q17RC7 722 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 EHBP1Q8NDI1 1231 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 TAS1R2Q8TE23 839 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 HDAC7Q8WUI4 952 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 RABGGTAQ92696 567 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 NT5C1BQ96P26 610 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 NIF3L1Q9GZT8 377 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 MTRRQ9UBK8 725 aa18.77■□□□□ 0.6
CLSTN3-210ENST00000540931 C2orf71A6NGG8 1288 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 RBAK-RBAKDNI3L0D1 243 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 CA8P35219 290 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 ERVFC1P60507 584 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 TSPY1Q01534 308 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 KRT31Q15323 416 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 CBWD6Q4V339 395 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 CBWD3Q5JTY5 395 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 CBWD5Q5RIA9 395 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 VARS2Q5ST30 1063 aaKnown RBP18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 TPGS2Q68CL5 300 aa18.76■□□□□ 0.59
CLSTN3-210ENST00000540931 LIMS2Q7Z4I7 341 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms