RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TRPC3Q13507 836 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 GRB14Q14449 540 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 ZNF699Q32M78 642 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 PPP1R15BQ5SWA1 713 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 FEZF2Q8TBJ5 459 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 MAIP1Q8WWC4 291 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 HERPUD2Q9BSE4 406 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 PDZD7Q9H5P4 517 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 LCMT1Q9UIC8 334 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 GRIN2DO15399 1336 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 TFAMQ00059 246 aaKnown RBP14.64□□□□□ -0.07
RTN3-210ENST00000540798 DHX9Q08211 1270 aaKnown RBP14.64□□□□□ -0.07
RTN3-210ENST00000540798 PHLDB2Q86SQ0 1253 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 WDTC1Q8N5D0 677 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 FAM212AQ96EL1 285 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 ZNF668Q96K58 619 aaPredicted RBP14.64□□□□□ -0.07
RTN3-210ENST00000540798 TRIM31Q9BZY9 425 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 SNX24Q9Y343 169 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.64□□□□□ -0.07
RTN3-210ENST00000540798 TMEM191CA6NGB0 347 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 CALB1P05937 261 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 CXCL8P10145 99 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 EIF4BP23588 611 aaKnown RBP14.64□□□□□ -0.07
RTN3-210ENST00000540798 TAS2R40P59535 323 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 TNFAIP2Q03169 654 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 MTHFD1LQ6UB35 978 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 LEKR1Q6ZMV7 388 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 RHOT1Q8IXI2 618 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.64□□□□□ -0.07
RTN3-210ENST00000540798 AFG1LQ8WV93 481 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 ART4Q93070 314 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 VRTNQ9H8Y1 702 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 RPF1Q9H9Y2 349 aaKnown RBP14.64□□□□□ -0.07
RTN3-210ENST00000540798 PARP2Q9UGN5 583 aa14.64□□□□□ -0.07
RTN3-210ENST00000540798 CCL15-CCL14A0A0B4J2E2 113 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 PPFIA4O75335 1185 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 SSTR3P32745 418 aaPredicted RBP14.63□□□□□ -0.07
RTN3-210ENST00000540798 ADCYAP1R1P41586 468 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 FKBP1BP68106 108 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 CCL15Q16663 113 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 CEP85LQ5SZL2 805 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 FBXO25Q8TCJ0 367 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 TFAP2BQ92481 460 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 A0A087WZ62 844 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 A6NNZ2 444 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 O00370 1275 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 NUDT17P0C025 328 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 YWHAEP62258 255 aaKnown RBP14.63□□□□□ -0.07
RTN3-210ENST00000540798 ZNF252P-AS1Q0IIN9 211 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 TUBB8Q3ZCM7 444 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 SH2D3CQ8N5H7 860 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 C1orf127Q8N9H9 656 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 FDXACB1Q9BRP7 624 aaPredicted RBP14.63□□□□□ -0.07
RTN3-210ENST00000540798 CAPS2Q9BXY5 557 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 IP6K2Q9UHH9 426 aa14.63□□□□□ -0.07
RTN3-210ENST00000540798 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.62□□□□□ -0.07
RTN3-210ENST00000540798 TP73O15350 636 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 TLR3O15455 904 aaKnown RBP14.62□□□□□ -0.07
RTN3-210ENST00000540798 STAG3L1P0CL83 205 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 CD58P19256 250 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 IRAK1P51617 712 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 KYAT1Q16773 422 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 MARCH8Q5T0T0 291 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 SYDE1Q6ZW31 735 aaPredicted RBP14.62□□□□□ -0.07
RTN3-210ENST00000540798 GPR142Q7Z601 462 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 CDR2LQ86X02 465 aaPredicted RBP14.62□□□□□ -0.07
RTN3-210ENST00000540798 GPATCH11Q8N954 259 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 TMEM35BQ8NCS4 154 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 EXD1Q8NHP7 514 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 ASB7Q9H672 318 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 PASKQ96RG2 1323 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 LACTBL1A8MY62 500 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 NFICP08651 508 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 WEE2P0C1S8 567 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 ZNF286BP0CG31 522 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 IGBP1P78318 339 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 SGO2Q562F6 1265 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 AGBL2Q5U5Z8 902 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 CCDC105Q8IYK2 499 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 OR2W6PQ8NHA6 318 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 UBLCP1Q8WVY7 318 aaPredicted RBP14.62□□□□□ -0.07
RTN3-210ENST00000540798 MAML3Q96JK9 1138 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 DCLK3Q9C098 648 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 LHX5Q9H2C1 402 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 POLIQ9UNA4 740 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 NEU2Q9Y3R4 380 aa14.62□□□□□ -0.07
RTN3-210ENST00000540798 ECEL1O95672 775 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 PLTPP55058 493 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 GSCP56915 257 aaPredicted RBP14.61□□□□□ -0.07
RTN3-210ENST00000540798 OSTNP61366 133 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 DUSP28Q4G0W2 176 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 KCTD16Q68DU8 428 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 NIPA2Q8N8Q9 360 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 GEMIN8Q9NWZ8 242 aaKnown RBP14.61□□□□□ -0.07
RTN3-210ENST00000540798 CITO14578 2027 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 TRIM66O15016 1216 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 ERLIN2O94905 339 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 IVLP07476 585 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 MMP3P08254 477 aa14.61□□□□□ -0.07
RTN3-210ENST00000540798 PAEPP09466 180 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms