RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PRR11Q96HE9 360 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 OLFM3Q96PB7 478 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 AMNQ9BXJ7 453 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 RHBDL2Q9NX52 303 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 SEL1LQ9UBV2 794 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 SIGLEC16A6NMB1 481 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 SGK1O00141 431 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 BANF1O75531 89 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 ABHD2P08910 425 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 FBXO11Q86XK2 927 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 PYROXD1Q8WU10 500 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 GATA6Q92908 595 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 NT5C1BQ96P26 610 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 POLR3CQ9BUI4 534 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 SPATA16Q9BXB7 569 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 TLE6Q9H808 572 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 NOCTQ9UK39 431 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 MTO1Q9Y2Z2 717 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 CYP3A7-CYP3A51PA0A087WV96 503 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 FCHO1O14526 889 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 USP1O94782 785 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 MT-ND3P03897 115 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 SNHG28P0DPA3 235 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 MYL2P10916 166 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 ETS1P14921 441 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 CYP3A7P24462 503 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 PHBP35232 272 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 NSFP46459 744 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 NFIXQ14938 502 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 CCNG2Q16589 344 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 WDR72Q3MJ13 1102 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 LIN52Q52LA3 116 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 SLFN13Q68D06 897 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 ACAD10Q6JQN1 1059 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 RGS9BPQ6ZS82 235 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 C1orf186Q6ZWK4 172 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 NME8Q8N427 588 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 SMC1BQ8NDV3 1235 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 RILPQ96NA2 401 aa13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 NR1H4Q96RI1 486 aaPredicted RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 RANBP17Q9H2T7 1088 aaKnown RBP13.54□□□□□ -0.24
SFSWAP-209ENST00000540469 MEIS2O14770 477 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 KRT10P13645 584 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 PALM2Q8IXS6 379 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 XXYLT1Q8NBI6 393 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 LMO3Q8TAP4 145 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 NMD3Q96D46 503 aaKnown RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 FHDC1Q9C0D6 1143 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 KRT82Q9NSB4 513 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SLC17A7Q9P2U7 560 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SRP68Q9UHB9 627 aaKnown RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 ZBTB21Q9ULJ3 1066 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 KIF13BQ9NQT8 1826 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 UMODL1Q5DID0 1318 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SPATA31A1Q5TZJ5 1347 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 LPXNO60711 386 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 HLA-DOAP06340 250 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 FGFR1P11362 822 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 CDK16Q00536 496 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 RASA2Q15283 850 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 FAM71AQ8IYT1 594 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 ZNF398Q8TD17 642 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 IFT43Q96FT9 208 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 GALNT8Q9NY28 637 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 COL22A1Q8NFW1 1626 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 A8MXQ7 604 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 CFBP00751 764 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 FOSP01100 380 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SLURP2P0DP57 97 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 ANPEPP15144 967 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SSTR3P32745 418 aaPredicted RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SLC1A1P43005 524 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 GEMIN4P57678 1058 aaKnown RBP13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 EFTUD2Q15029 972 aaKnown RBP eCLIP13.53□□□□□ -0.243e-6■■□□□ 11.7
SFSWAP-209ENST00000540469 MOXD1Q6UVY6 613 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 SCUBE1Q8IWY4 988 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 RHOT1Q8IXI2 618 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 HIPK4Q8NE63 616 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 CLPTM1LQ96KA5 538 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 KREMEN1Q96MU8 473 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 NACC1Q96RE7 527 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 ECSITQ9BQ95 431 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 FOXP3Q9BZS1 431 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 ATXN10Q9UBB4 475 aa13.53□□□□□ -0.24
SFSWAP-209ENST00000540469 I3L4J1 428 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 KITP10721 976 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 SSTR1P30872 391 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 CCNFP41002 786 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 TMEM62Q0P6H9 643 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 EAPPQ56P03 285 aaPredicted RBP13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 PASD1Q8IV76 773 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 MTBPQ96DY7 904 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 FAM111AQ96PZ2 611 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 C11orf70Q9BRQ4 267 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 QTRT2Q9H974 415 aaKnown RBP13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 CD209Q9NNX6 404 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 GINM1Q9NU53 330 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 DMAC2Q9NW81 257 aa13.52□□□□□ -0.24
SFSWAP-209ENST00000540469 NUMBLQ9Y6R0 609 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms