RNA–Protein interactions for RNA: ENST00000539533.3

PCDHB17P-201, Transcript of protocadherin beta 17 pseudogene, humanhuman

BASIC

Gene PCDHB17P, Length 2,393 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB17P-201ENST00000539533 KRT19P08727 400 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 MAP2K2P36507 400 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 SGSM1Q2NKQ1 1148 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 TUBB8Q3ZCM7 444 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 FAM47CQ5HY64 1035 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 C1orf127Q8N9H9 656 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 CXCL16Q9H2A7 254 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 PCDHB4Q9Y5E5 795 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 MROH7Q68CQ1 1323 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 FTLP02792 175 aaPredicted RBP18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 HOXD10P28358 340 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 CARSP49589 748 aaKnown RBP18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 NKX3-2P78367 333 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 CDR2Q01850 454 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 TMEM270Q6UE05 265 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 THAP2Q9H0W7 228 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 XYLT2Q9H1B5 865 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 ASB7Q9H672 318 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 SIX4Q9UIU6 781 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 HES2Q9Y543 173 aa18.22■□□□□ 0.51
PCDHB17P-201ENST00000539533 GRID2IPA4D2P6 1211 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 TBXAS1P24557 533 aaPredicted RBP18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 PDCLQ13371 301 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 SLC27A1Q6PCB7 646 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 NME8Q8N427 588 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 SH2D3CQ8N5H7 860 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 KLHDC9Q8NEP7 349 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 ARHGEF26Q96DR7 871 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 SNTG2Q9NY99 539 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 NFU1Q9UMS0 254 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 PCDHGC5Q9Y5F6 944 aa18.21■□□□□ 0.51
PCDHB17P-201ENST00000539533 ATP8B3O60423 1300 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 HEXIM1O94992 359 aaKnown RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 KRT14P02533 472 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 HMGCRP04035 888 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 FAM153BP0C7A2 387 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 TMEM253P0C7T8 217 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 GRM5P41594 1212 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 CRYBB1P53674 252 aaPredicted RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 PAK2Q13177 524 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 KYAT1Q16773 422 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 FAM153CQ494X1 144 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 NOTUMQ6P988 496 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 IQCKQ8N0W5 287 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 RAET1EQ8TD07 263 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 WNT8BQ93098 351 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 ISCUQ9H1K1 167 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 GOLPH3Q9H4A6 298 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 EPB41L5Q9HCM4 733 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 FAM153AQ9UHL3 310 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 ESYT3A0FGR9 886 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 ANKRD62A6NC57 917 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 ZSCAN5CA6NGD5 496 aaPredicted RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 FTCDO95954 541 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 ITGB3P05106 788 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 GUCY2FP51841 1108 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 POU5F1Q01860 360 aaKnown RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 GUCY2DQ02846 1103 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 ZNF699Q32M78 642 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 DCAF4L1Q3SXM0 396 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 CFAP58Q5T655 872 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 KCTD16Q68DU8 428 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 CCSAPQ6IQ19 270 aaPredicted RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 TAF2Q6P1X5 1199 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 IFT81Q8WYA0 676 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 CTNNBL1Q8WYA6 563 aaPredicted RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 OSGEPQ9NPF4 335 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 PIN4Q9Y237 131 aaKnown RBP18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 PCDHB2Q9Y5E7 798 aa18.2■□□□□ 0.5
PCDHB17P-201ENST00000539533 CD58P19256 250 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 YY1P25490 414 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 PCBP1Q15365 356 aaKnown RBP eCLIP18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 MAP3K21Q5TCX8 1036 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 CXorf38Q8TB03 319 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 SLC35G2Q8TBE7 412 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 CELF4Q9BZC1 486 aaKnown RBP18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 RTN2O75298 545 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 WEE2P0C1S8 567 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 CHRM1P11229 460 aaPredicted RBP18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 DNA2P51530 1060 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 TMEM132DQ14C87 1099 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 SCARA5Q6ZMJ2 495 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 MREGQ8N565 214 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 UBR7Q8N806 425 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 RBBP8NLQ8NC74 664 aaPredicted RBP18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 TPCN2Q8NHX9 752 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 NIF3L1Q9GZT8 377 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 NXF1Q9UBU9 619 aaKnown RBP18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 POLIQ9UNA4 740 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 PACSIN2Q9UNF0 486 aaPredicted RBP18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 CNTN6Q9UQ52 1028 aa18.19■□□□□ 0.5
PCDHB17P-201ENST00000539533 A0A0A6YYK5 440 aaPredicted RBP18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 NDUFAB1O14561 156 aa18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 GZMAP12544 262 aa18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 ATP1A2P50993 1020 aa18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 NXF3Q9H4D5 531 aaKnown RBP18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 RNF19AQ9NV58 838 aa18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 CHORDC1Q9UHD1 332 aaPredicted RBP18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 CITO14578 2027 aa18.18■□□□□ 0.5
PCDHB17P-201ENST00000539533 CFHP08603 1231 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms