RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 EXOC4Q96A65 974 aa13.2□□□□□ -0.3
YBX3-207ENST00000539204 NAP1L4Q99733 375 aaKnown RBP13.2□□□□□ -0.3
YBX3-207ENST00000539204 NUSAP1Q9BXS6 441 aaKnown RBP13.2□□□□□ -0.3
YBX3-207ENST00000539204 INVSQ9Y283 1065 aa13.2□□□□□ -0.3
YBX3-207ENST00000539204 YIPF1Q9Y548 306 aa13.2□□□□□ -0.3
YBX3-207ENST00000539204 NID2Q14112 1375 aa13.2□□□□□ -0.3
YBX3-207ENST00000539204 ATG2BQ96BY7 2078 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 USO1O60763 962 aaKnown RBP13.19□□□□□ -0.3
YBX3-207ENST00000539204 CPA1P15085 419 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 ATP2B1P20020 1258 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 WEE1P30291 646 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 RPL9P32969 192 aaKnown RBP13.19□□□□□ -0.3
YBX3-207ENST00000539204 MCM2P49736 904 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 GALK1P51570 392 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 DUSP4Q13115 394 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 RUNX3Q13761 415 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 FBXO43Q4G163 708 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 ALKAL1Q6UXT8 129 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 GAREM2Q75VX8 874 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 DNAJB7Q7Z6W7 309 aaPredicted RBP13.19□□□□□ -0.3
YBX3-207ENST00000539204 MCPH1Q8NEM0 835 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 PIGKQ92643 395 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 DDX12PQ92771 950 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 SUSD3Q96L08 255 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 FBRSL1Q9HCM7 1045 aaKnown RBP13.19□□□□□ -0.3
YBX3-207ENST00000539204 TOPORSQ9NS56 1045 aaPredicted RBP13.19□□□□□ -0.3
YBX3-207ENST00000539204 PCDHA12Q9UN75 941 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 ASB3Q9Y575 518 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 ABCA7Q8IZY2 2146 aa13.19□□□□□ -0.3
YBX3-207ENST00000539204 ASCC3Q8N3C0 2202 aaKnown RBP13.19□□□□□ -0.3
YBX3-207ENST00000539204 A0A087WWV3 80 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 DEXIO95424 95 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 GABRR2P28476 465 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 DHPSP49366 369 aaPredicted RBP13.18□□□□□ -0.3
YBX3-207ENST00000539204 SCAPQ12770 1279 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 DMC1Q14565 340 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 TRIM61Q5EBN2 209 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 XKR4Q5GH76 650 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 ATF7IP2Q5U623 682 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 POTEDQ86YR6 584 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 FAM177A1Q8N128 213 aaPredicted RBP13.18□□□□□ -0.3
YBX3-207ENST00000539204 RPLP0P6Q8NHW5 317 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 DEPTORQ8TB45 409 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 HNRNPLLQ8WVV9 542 aaKnown RBP13.18□□□□□ -0.3
YBX3-207ENST00000539204 FAM83CQ9BQN1 747 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 OXCT2Q9BYC2 517 aaPredicted RBP13.18□□□□□ -0.3
YBX3-207ENST00000539204 DNAJC25Q9H1X3 360 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 TASP1Q9H6P5 420 aa13.18□□□□□ -0.3
YBX3-207ENST00000539204 NCOA5Q9HCD5 579 aaKnown RBP13.18□□□□□ -0.3
YBX3-207ENST00000539204 EVLQ9UI08 416 aaPredicted RBP13.18□□□□□ -0.3
YBX3-207ENST00000539204 CELSR3Q9NYQ7 3312 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 OTOL1A6NHN0 477 aaPredicted RBP13.17□□□□□ -0.3
YBX3-207ENST00000539204 UPK3BL1B0FP48 263 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 UPK3BL2E5RIL1 263 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 PDIA3P30101 505 aaKnown RBP13.17□□□□□ -0.3
YBX3-207ENST00000539204 MCM4P33991 863 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 MAPK8P45983 427 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 NPY5RQ15761 445 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 PIP4P1Q86T03 277 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 ITIH5Q86UX2 942 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 FBXL16Q8N461 479 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 GLIS3Q8NEA6 775 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 BEST2Q8NFU1 509 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 PSMG2Q969U7 264 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 ACDQ96AP0 544 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 TBC1D32Q96NH3 1257 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 PGLYRP2Q96PD5 576 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 BBC3Q96PG8 261 aaPredicted RBP13.17□□□□□ -0.3
YBX3-207ENST00000539204 P2RY13Q9BPV8 354 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 CCDC94Q9BW85 323 aaPredicted RBP13.17□□□□□ -0.3
YBX3-207ENST00000539204 CCDC113Q9H0I3 377 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 EBF3Q9H4W6 596 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 SLC27A5Q9Y2P5 690 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 EML5Q05BV3 1969 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 CACNA1EQ15878 2313 aa13.17□□□□□ -0.3
YBX3-207ENST00000539204 OAZ2O95190 189 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 PRAMEF12O95522 483 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 EDN1P05305 212 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 NAMPTP43490 491 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 OSTNP61366 133 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 PSMD2Q13200 908 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 SEMA3BQ13214 749 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 GPR17Q13304 367 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 ZNF423Q2M1K9 1284 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 NT5DC1Q5TFE4 455 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 HDDC3Q8N4P3 179 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 TSTD1Q8NFU3 115 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 CHFRQ96EP1 664 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 ZMAT2Q96NC0 199 aaKnown RBP13.16□□□□□ -0.3
YBX3-207ENST00000539204 NACC1Q96RE7 527 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 SMG9Q9H0W8 520 aaKnown RBP13.16□□□□□ -0.3
YBX3-207ENST00000539204 CCDC86Q9H6F5 360 aaKnown RBP13.16□□□□□ -0.3
YBX3-207ENST00000539204 HPS4Q9NQG7 708 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 PCDHB8Q9UN66 801 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 KCNJ14Q9UNX9 436 aa13.16□□□□□ -0.3
YBX3-207ENST00000539204 NUP205Q92621 2012 aa13.15□□□□□ -0.3
YBX3-207ENST00000539204 ASXL3Q9C0F0 2248 aa13.15□□□□□ -0.3
YBX3-207ENST00000539204 CPLX1O14810 134 aa13.15□□□□□ -0.3
YBX3-207ENST00000539204 VNN2O95498 520 aa13.15□□□□□ -0.3
YBX3-207ENST00000539204 OR4Q2P0C623 313 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms