RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PABPC5Q96DU9 382 aaKnown RBP12.84□□□□□ -0.35
CLIP1-208ENST00000537004 SPAG5Q96R06 1193 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TCF25Q9BQ70 676 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 CBWD1Q9BRT8 395 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 C17orf75Q9HAS0 396 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 PARP2Q9UGN5 583 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TADA3O75528 432 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TRIM49P0CI25 452 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TRIM49CP0CI26 452 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 SNRPFP62306 86 aaKnown RBP12.84□□□□□ -0.35
CLIP1-208ENST00000537004 ARID5AQ03989 594 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 GFPT1Q06210 699 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-208ENST00000537004 KLHL30Q0D2K2 578 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TUBB2AQ13885 445 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 ASIC2Q16515 512 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 CTC1Q2NKJ3 1217 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TMC7Q7Z402 723 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-208ENST00000537004 URGCPQ8TCY9 931 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 SPIRE2Q8WWL2 714 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 HVCN1Q96D96 273 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TUBB2BQ9BVA1 445 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 VN1R3Q9BXE9 311 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 KMT5AQ9NQR1 393 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 ENTPD7Q9NQZ7 604 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 SNTG2Q9NY99 539 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 ARHGAP28Q9P2N2 729 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 CDC23Q9UJX2 597 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 MYO6Q9UM54 1294 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 TBX20Q9UMR3 447 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 EXOC7Q9UPT5 735 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 DUSP10Q9Y6W6 482 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 MACROD2A1Z1Q3 448 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 EFCAB8A8MWE9 144 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 TBX10O75333 385 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 KRT13P13646 458 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 PPM1AP35813 382 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 EFNA5P52803 228 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 KRT17Q04695 432 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 UBE3AQ05086 875 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 COL19A1Q14993 1142 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 CBWD6Q4V339 395 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 CBWD3Q5JTY5 395 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 CBWD5Q5RIA9 395 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 INTS8Q75QN2 995 aaKnown RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 XXYLT1Q8NBI6 393 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 TMEM169Q96HH4 297 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 IGSF21Q96ID5 467 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 NTPCRQ9BSD7 190 aaKnown RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 TARS2Q9BW92 718 aaKnown RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 TLE6Q9H808 572 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 HSPBP1Q9NZL4 362 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 PUF60Q9UHX1 559 aaKnown RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 PRG3Q9Y2Y8 225 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 PLXNA4Q9HCM2 1894 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 TCF20Q9UGU0 1960 aaKnown RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 ATG2AQ2TAZ0 1938 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 FSCN2O14926 492 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 GLP2RO95838 553 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 CA8P35219 290 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 MYL7Q01449 175 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 AAK1Q2M2I8 961 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 ATF7IP2Q5U623 682 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 MAP4K3Q8IVH8 894 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 VPS52Q8N1B4 723 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 CEP120Q8N960 986 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 VN1R2Q8NFZ6 395 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 UBXN4Q92575 508 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 SECISBP2LQ93073 1101 aaKnown RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 CCDC94Q9BW85 323 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 AJAP1Q9UKB5 411 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-208ENST00000537004 GIT1Q9Y2X7 761 aa12.83□□□□□ -0.36
CLIP1-208ENST00000537004 NRP1O14786 923 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 MAPK13O15264 365 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 IL9P15248 144 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 MAGEA1P43355 309 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 OR1G1P47890 313 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 JAM2P57087 298 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 AMPD2Q01433 879 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 ENOX2Q16206 610 aaKnown RBP12.82□□□□□ -0.36
CLIP1-208ENST00000537004 IQCEQ6IPM2 695 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 GJB7Q6PEY0 223 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 IRF2BP2Q7Z5L9 587 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 COLGALT2Q8IYK4 626 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 PDCL2Q8N4E4 241 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 ZSWIM2Q8NEG5 633 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 ZBTB45Q96K62 511 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-208ENST00000537004 FAM193BQ96PV7 902 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-208ENST00000537004 UHRF1Q96T88 793 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-208ENST00000537004 PAAF1Q9BRP4 392 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 UBN1Q9NPG3 1134 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 KANSL3Q9P2N6 904 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 BARX2Q9UMQ3 279 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-208ENST00000537004 LZTS1Q9Y250 596 aa12.82□□□□□ -0.36
CLIP1-208ENST00000537004 PJA2O43164 708 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 RECQL4O94761 1208 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ALDH2P05091 517 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 ADSSP30520 456 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 VAMP7P51809 220 aa12.81□□□□□ -0.36
CLIP1-208ENST00000537004 OSTNP61366 133 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms