RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SLC27A5Q9Y2P5 690 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 VPS13AQ96RL7 3174 aa15.96■□□□□ 0.15
VPS28-215ENST00000531924 ANKRD63C9JTQ0 380 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 KINO60870 393 aaKnown RBP15.95■□□□□ 0.14
VPS28-215ENST00000531924 FGF19O95750 216 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 ADRB2P07550 413 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 GAP43P17677 238 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 FCARP24071 287 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 VIPR2P41587 438 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 EPHA5P54756 1037 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 CSTF1Q05048 431 aaKnown RBP15.95■□□□□ 0.14
VPS28-215ENST00000531924 CUL4AQ13619 759 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 VEPH1Q14D04 833 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 SLC39A4Q6P5W5 647 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 ITIH5Q86UX2 942 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 SFR1Q86XK3 245 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 HVCN1Q96D96 273 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 ST6GALNAC4Q9H4F1 302 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 DPP3Q9NY33 737 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 SEL1LQ9UBV2 794 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 FBXO4Q9UKT5 387 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 C2CD2Q9Y426 696 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 ASB3Q9Y575 518 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 DOCK6Q96HP0 2047 aa15.95■□□□□ 0.14
VPS28-215ENST00000531924 A0A1W2PRU2 124 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 PPEF2O14830 753 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 IL18RAPO95256 599 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 TARSP26639 723 aaKnown RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 TUFMP49411 452 aaKnown RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 TAF6P49848 677 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 ZNF528Q3MIS6 628 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 ARHGAP15Q53QZ3 475 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 CENPPQ6IPU0 288 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 CCDC73Q6ZRK6 1079 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 USP49Q70CQ1 688 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 ZNF720Q7Z2F6 126 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 SYCP3Q8IZU3 236 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 ATAD1Q8NBU5 361 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 SHKBP1Q8TBC3 707 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 CSGALNACT1Q8TDX6 532 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 ACCSQ96QU6 501 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 SEPT5Q99719 369 aaPredicted RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 PYM1Q9BRP8 204 aaKnown RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 FBXO2Q9UK22 296 aaPredicted RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 SRPRBQ9Y5M8 271 aaKnown RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 MYH11P35749 1972 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 RIF1Q5UIP0 2472 aaKnown RBP15.94■□□□□ 0.14
VPS28-215ENST00000531924 MYH15Q9Y2K3 1946 aa15.94■□□□□ 0.14
VPS28-215ENST00000531924 MTMR11A4FU01 709 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 TISP43B9A030 160 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 PIRO00625 290 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 DPYSL4O14531 572 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 CYB561D2O14569 222 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 SPTLC1O15269 473 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 GCNT3O95395 438 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 IDEP14735 1019 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 SYT1P21579 422 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 STAT6P42226 847 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 RPS9P46781 194 aaKnown RBP15.93■□□□□ 0.14
VPS28-215ENST00000531924 PPP2R5DQ14738 602 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 MGAT5BQ3V5L5 792 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 SLC39A12Q504Y0 691 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 POTEHQ6S545 545 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 VITQ6UXI7 678 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 DNAJB7Q7Z6W7 309 aaPredicted RBP15.93■□□□□ 0.14
VPS28-215ENST00000531924 MFSD6LQ8IWD5 586 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 FAM3CQ92520 227 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 CLDN23Q96B33 292 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 BORCS6Q96GS4 357 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 CLIC6Q96NY7 704 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 GCNAQ96QF7 691 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 FIZ1Q96SL8 496 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 ATXN3LQ9H3M9 355 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 TRPV4Q9HBA0 871 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 ZNF334Q9HCZ1 680 aaPredicted RBP15.93■□□□□ 0.14
VPS28-215ENST00000531924 TBC1D7Q9P0N9 293 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 PCDHB13Q9Y5F0 798 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 PIAS3Q9Y6X2 628 aa15.93■□□□□ 0.14
VPS28-215ENST00000531924 MYO15AQ9UKN7 3530 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 ANO9A1A5B4 782 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 HEPACAM2A8MVW5 462 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 MOSPD3O75425 235 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 ID4P47928 161 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 KPNA1P52294 538 aaPredicted RBP15.92■□□□□ 0.14
VPS28-215ENST00000531924 TFAMQ00059 246 aaKnown RBP15.92■□□□□ 0.14
VPS28-215ENST00000531924 FOXK2Q01167 660 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 POU5F1Q01860 360 aaKnown RBP15.92■□□□□ 0.14
VPS28-215ENST00000531924 PTPAQ15257 358 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 SV2CQ496J9 727 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 FAM173BQ6P4H8 233 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 MAML2Q8IZL2 1156 aaPredicted RBP15.92■□□□□ 0.14
VPS28-215ENST00000531924 NOC3LQ8WTT2 800 aaKnown RBP15.92■□□□□ 0.14
VPS28-215ENST00000531924 RUBCNQ92622 972 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 ZNF560Q96MR9 790 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 FAM213AQ9BRX8 229 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 PANK2Q9BZ23 570 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 CRISPLD1Q9H336 500 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 TRPV5Q9NQA5 729 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 HSFX1Q9UBD0 423 aa15.92■□□□□ 0.14
VPS28-215ENST00000531924 R3HCC1Q9Y3T6 440 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms